Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
XRCC3O43542 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
XRCC3O43542 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.13■□□□□ 0.65
XRCC3O43542 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
XRCC3O43542 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
XRCC3O43542 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
XRCC3O43542 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
XRCC3O43542 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
XRCC3O43542 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC19.13■□□□□ 0.65
XRCC3O43542 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
XRCC3O43542 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.13■□□□□ 0.65
XRCC3O43542 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
XRCC3O43542 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC19.13■□□□□ 0.65
XRCC3O43542 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
XRCC3O43542 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
XRCC3O43542 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC19.12■□□□□ 0.65
XRCC3O43542 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
XRCC3O43542 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
XRCC3O43542 FBXW4P1-201ENST00000426721 2239 ntBASIC19.12■□□□□ 0.65
XRCC3O43542 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
XRCC3O43542 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
XRCC3O43542 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
XRCC3O43542 AC009831.1-201ENST00000580420 1582 ntBASIC19.11■□□□□ 0.65
XRCC3O43542 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
XRCC3O43542 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
XRCC3O43542 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
XRCC3O43542 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
XRCC3O43542 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
XRCC3O43542 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
XRCC3O43542 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
XRCC3O43542 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
XRCC3O43542 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC19.1■□□□□ 0.65
XRCC3O43542 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC19.1■□□□□ 0.65
XRCC3O43542 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
XRCC3O43542 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC19.1■□□□□ 0.65
XRCC3O43542 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
XRCC3O43542 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
XRCC3O43542 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
XRCC3O43542 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
XRCC3O43542 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
XRCC3O43542 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC19.1■□□□□ 0.65
XRCC3O43542 AC087393.1-201ENST00000582896 145 ntBASIC19.1■□□□□ 0.65
XRCC3O43542 AC133552.2-201ENST00000619106 1032 ntBASIC19.1■□□□□ 0.65
XRCC3O43542 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
XRCC3O43542 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
XRCC3O43542 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
XRCC3O43542 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
XRCC3O43542 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
XRCC3O43542 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
XRCC3O43542 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
XRCC3O43542 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
XRCC3O43542 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
XRCC3O43542 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC19.1■□□□□ 0.65
XRCC3O43542 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
XRCC3O43542 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
XRCC3O43542 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
XRCC3O43542 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
XRCC3O43542 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
XRCC3O43542 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.09■□□□□ 0.65
XRCC3O43542 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
XRCC3O43542 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
XRCC3O43542 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
XRCC3O43542 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
XRCC3O43542 AC080038.3-201ENST00000623346 1952 ntBASIC19.09■□□□□ 0.65
XRCC3O43542 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
XRCC3O43542 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
XRCC3O43542 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
XRCC3O43542 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
XRCC3O43542 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC19.08■□□□□ 0.65
XRCC3O43542 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
XRCC3O43542 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
XRCC3O43542 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
XRCC3O43542 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
XRCC3O43542 AC018755.3-202ENST00000596210 929 ntBASIC19.08■□□□□ 0.64
XRCC3O43542 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
XRCC3O43542 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC19.08■□□□□ 0.64
XRCC3O43542 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
XRCC3O43542 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
XRCC3O43542 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
XRCC3O43542 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
XRCC3O43542 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
XRCC3O43542 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
XRCC3O43542 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC19.07■□□□□ 0.64
XRCC3O43542 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
XRCC3O43542 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC19.07■□□□□ 0.64
XRCC3O43542 AL353803.4-201ENST00000565882 1934 ntBASIC19.07■□□□□ 0.64
XRCC3O43542 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
XRCC3O43542 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
XRCC3O43542 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC19.07■□□□□ 0.64
XRCC3O43542 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
XRCC3O43542 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
XRCC3O43542 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
XRCC3O43542 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
XRCC3O43542 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC19.06■□□□□ 0.64
XRCC3O43542 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
XRCC3O43542 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
XRCC3O43542 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
XRCC3O43542 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
XRCC3O43542 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
XRCC3O43542 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms