Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB3O15347 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
HMGB3O15347 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB3O15347 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
HMGB3O15347 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGB3O15347 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGB3O15347 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC17.94■□□□□ 0.46
HMGB3O15347 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC17.94■□□□□ 0.46
HMGB3O15347 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGB3O15347 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HMGB3O15347 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
HMGB3O15347 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGB3O15347 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.94■□□□□ 0.46
HMGB3O15347 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGB3O15347 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC17.94■□□□□ 0.46
HMGB3O15347 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGB3O15347 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC17.94■□□□□ 0.46
HMGB3O15347 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGB3O15347 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGB3O15347 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HMGB3O15347 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGB3O15347 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGB3O15347 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC17.94■□□□□ 0.46
HMGB3O15347 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGB3O15347 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGB3O15347 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
HMGB3O15347 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
HMGB3O15347 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC17.93■□□□□ 0.46
HMGB3O15347 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HMGB3O15347 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC17.93■□□□□ 0.46
HMGB3O15347 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HMGB3O15347 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HMGB3O15347 AL137060.1-201ENST00000618151 2648 ntBASIC17.93■□□□□ 0.46
HMGB3O15347 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
HMGB3O15347 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HMGB3O15347 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HMGB3O15347 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
HMGB3O15347 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HMGB3O15347 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGB3O15347 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGB3O15347 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGB3O15347 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
HMGB3O15347 FOXO3B-201ENST00000395675 1928 ntBASIC17.92■□□□□ 0.46
HMGB3O15347 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC17.92■□□□□ 0.46
HMGB3O15347 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGB3O15347 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGB3O15347 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HMGB3O15347 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
HMGB3O15347 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HMGB3O15347 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
HMGB3O15347 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
HMGB3O15347 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC17.91■□□□□ 0.46
HMGB3O15347 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
HMGB3O15347 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC17.91■□□□□ 0.46
HMGB3O15347 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HMGB3O15347 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
HMGB3O15347 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
HMGB3O15347 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HMGB3O15347 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC17.91■□□□□ 0.46
HMGB3O15347 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HMGB3O15347 AC092068.2-201ENST00000590491 1708 ntBASIC17.91■□□□□ 0.46
HMGB3O15347 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HMGB3O15347 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC17.91■□□□□ 0.46
HMGB3O15347 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
HMGB3O15347 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HMGB3O15347 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGB3O15347 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC17.9■□□□□ 0.46
HMGB3O15347 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC17.9■□□□□ 0.46
HMGB3O15347 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGB3O15347 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
HMGB3O15347 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.9■□□□□ 0.46
HMGB3O15347 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
HMGB3O15347 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGB3O15347 AC127496.7-201ENST00000625110 1798 ntBASIC17.9■□□□□ 0.46
HMGB3O15347 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGB3O15347 PFN2-211ENST00000489155 636 ntTSL 4 BASIC17.9■□□□□ 0.46
HMGB3O15347 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGB3O15347 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
HMGB3O15347 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGB3O15347 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.46
HMGB3O15347 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.46
HMGB3O15347 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
HMGB3O15347 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB3O15347 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB3O15347 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC17.89■□□□□ 0.45
HMGB3O15347 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC17.89■□□□□ 0.45
HMGB3O15347 COMT-203ENST00000403184 2217 ntTSL 2 BASIC17.89■□□□□ 0.45
HMGB3O15347 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
HMGB3O15347 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB3O15347 MIR3960-201ENST00000583311 91 ntBASIC17.89■□□□□ 0.45
HMGB3O15347 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
HMGB3O15347 AC137767.1-201ENST00000602918 1920 ntBASIC17.89■□□□□ 0.45
HMGB3O15347 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB3O15347 ECEL1P1-201ENST00000373592 1742 ntBASIC17.89■□□□□ 0.45
HMGB3O15347 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB3O15347 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
HMGB3O15347 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB3O15347 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB3O15347 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB3O15347 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 13.4 ms