Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.54■□□□□ 0.88
CPSF4LA6NMK7 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
CPSF4LA6NMK7 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC20.54■□□□□ 0.88
CPSF4LA6NMK7 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.54■□□□□ 0.88
CPSF4LA6NMK7 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.54■□□□□ 0.88
CPSF4LA6NMK7 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CPSF4LA6NMK7 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.54■□□□□ 0.88
CPSF4LA6NMK7 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CPSF4LA6NMK7 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
CPSF4LA6NMK7 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC20.54■□□□□ 0.88
CPSF4LA6NMK7 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.53■□□□□ 0.88
CPSF4LA6NMK7 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CPSF4LA6NMK7 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CPSF4LA6NMK7 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
CPSF4LA6NMK7 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CPSF4LA6NMK7 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.53■□□□□ 0.88
CPSF4LA6NMK7 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
CPSF4LA6NMK7 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CPSF4LA6NMK7 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CPSF4LA6NMK7 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
CPSF4LA6NMK7 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
CPSF4LA6NMK7 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CPSF4LA6NMK7 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CPSF4LA6NMK7 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CPSF4LA6NMK7 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CPSF4LA6NMK7 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CPSF4LA6NMK7 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CPSF4LA6NMK7 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
CPSF4LA6NMK7 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CPSF4LA6NMK7 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC20.52■□□□□ 0.88
CPSF4LA6NMK7 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC20.52■□□□□ 0.88
CPSF4LA6NMK7 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CPSF4LA6NMK7 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
CPSF4LA6NMK7 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.87
CPSF4LA6NMK7 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC20.52■□□□□ 0.87
CPSF4LA6NMK7 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.51■□□□□ 0.87
CPSF4LA6NMK7 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CPSF4LA6NMK7 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CPSF4LA6NMK7 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
CPSF4LA6NMK7 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CPSF4LA6NMK7 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20.51■□□□□ 0.87
CPSF4LA6NMK7 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
CPSF4LA6NMK7 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
CPSF4LA6NMK7 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CPSF4LA6NMK7 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CPSF4LA6NMK7 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CPSF4LA6NMK7 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
CPSF4LA6NMK7 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CPSF4LA6NMK7 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
CPSF4LA6NMK7 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC20.51■□□□□ 0.87
CPSF4LA6NMK7 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC20.51■□□□□ 0.87
CPSF4LA6NMK7 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CPSF4LA6NMK7 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CPSF4LA6NMK7 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CPSF4LA6NMK7 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CPSF4LA6NMK7 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.5■□□□□ 0.87
CPSF4LA6NMK7 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
CPSF4LA6NMK7 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC20.5■□□□□ 0.87
CPSF4LA6NMK7 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CPSF4LA6NMK7 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
CPSF4LA6NMK7 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.5■□□□□ 0.87
CPSF4LA6NMK7 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
CPSF4LA6NMK7 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.49■□□□□ 0.87
CPSF4LA6NMK7 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CPSF4LA6NMK7 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CPSF4LA6NMK7 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CPSF4LA6NMK7 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC20.49■□□□□ 0.87
CPSF4LA6NMK7 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CPSF4LA6NMK7 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CPSF4LA6NMK7 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CPSF4LA6NMK7 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC20.48■□□□□ 0.87
CPSF4LA6NMK7 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.48■□□□□ 0.87
CPSF4LA6NMK7 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20.48■□□□□ 0.87
CPSF4LA6NMK7 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CPSF4LA6NMK7 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
CPSF4LA6NMK7 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CPSF4LA6NMK7 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CPSF4LA6NMK7 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC20.47■□□□□ 0.87
CPSF4LA6NMK7 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC20.47■□□□□ 0.87
CPSF4LA6NMK7 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CPSF4LA6NMK7 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CPSF4LA6NMK7 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CPSF4LA6NMK7 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CPSF4LA6NMK7 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC20.47■□□□□ 0.87
CPSF4LA6NMK7 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.47■□□□□ 0.87
CPSF4LA6NMK7 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CPSF4LA6NMK7 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CPSF4LA6NMK7 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
CPSF4LA6NMK7 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CPSF4LA6NMK7 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
CPSF4LA6NMK7 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.46■□□□□ 0.87
CPSF4LA6NMK7 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CPSF4LA6NMK7 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CPSF4LA6NMK7 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.46■□□□□ 0.87
CPSF4LA6NMK7 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CPSF4LA6NMK7 BX664725.1-201ENST00000438252 379 ntBASIC20.46■□□□□ 0.87
CPSF4LA6NMK7 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CPSF4LA6NMK7 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CPSF4LA6NMK7 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CPSF4LA6NMK7 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms