Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC30.02■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC30.02■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.4
SENP3-EIF4A1A0A087X0R7 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC30.01■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC30.01■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC30■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC30■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC30■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 AC079630.1-202ENST00000618127 1840 ntBASIC30■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 COMT-203ENST00000403184 2217 ntTSL 2 BASIC30■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC30■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 REST-206ENST00000612429 1376 ntTSL 5 BASIC30■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 REST-207ENST00000616975 1370 ntTSL 5 BASIC30■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC30■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC29.99■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC29.99■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC29.99■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 AL162430.1-201ENST00000480705 870 ntBASIC29.99■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC29.99■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC29.99■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC29.99■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC29.99■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC29.99■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC29.98■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC29.98■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 C1orf229-201ENST00000623686 2258 ntBASIC29.97■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 LSM4-201ENST00000252816 986 ntTSL 2 BASIC29.97■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC29.97■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC29.97■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC29.97■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC29.97■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC29.96■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC29.96■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC29.96■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC29.96■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC29.96■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC29.96■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC29.95■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC29.95■■■□□ 2.39
SENP3-EIF4A1A0A087X0R7 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC29.95■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC29.95■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 AL161729.1-201ENST00000604104 1402 ntBASIC29.95■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC29.95■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC29.95■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 DENND3-207ENST00000518347 850 ntTSL 2 BASIC29.94■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC29.94■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC29.94■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC29.93■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC29.93■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 CD72-202ENST00000378430 585 ntTSL 3 BASIC29.93■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC29.93■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC29.93■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC29.93■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC29.93■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC29.92■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC29.91■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC29.91■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC29.91■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 MTDHP2-201ENST00000601468 714 ntBASIC29.91■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 AC010997.5-201ENST00000609182 354 ntBASIC29.91■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC29.91■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC29.9■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC29.9■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC29.9■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC29.9■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC29.89■■■□□ 2.38
SENP3-EIF4A1A0A087X0R7 MIR6821-201ENST00000617625 74 ntBASIC29.89■■■□□ 2.38
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms