Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 PTPRS-204ENST00000587303 6353 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 GPR88-201ENST00000315033 3491 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 MSANTD2P1-201ENST00000445341 1368 ntBASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 RN7SKP109-201ENST00000410592 316 ntBASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 AC005722.1-201ENST00000431878 964 ntBASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 CSNK1G2P1-201ENST00000442675 955 ntBASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 AL354861.1-201ENST00000445213 355 ntBASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 AC007279.1-201ENST00000448547 837 ntBASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 DNM1P30-201ENST00000563586 452 ntBASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 AC135983.4-201ENST00000564116 1262 ntBASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 RN7SL470P-201ENST00000583069 259 ntBASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 AC012073.1-201ENST00000606114 1108 ntBASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 AL031673.1-201ENST00000611460 466 ntBASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 GARS-210ENST00000627489 324 ntTSL 4 BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 IGF2BP1-201ENST00000290341 8274 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 LSS-211ENST00000522411 2523 ntTSL 2 BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 TYK2-205ENST00000525621 4347 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 TGFBR3-204ENST00000465892 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 ADAMTSL2-201ENST00000354484 4068 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 PES1P2-201ENST00000449745 1735 ntBASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 DLG4-203ENST00000399510 3975 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 SALL4P6-201ENST00000429385 1691 ntBASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 VASH1-AS1-202ENST00000556072 1684 ntTSL 2 BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 SMIM14-201ENST00000295958 6483 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 CCNB2-201ENST00000288207 1556 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 NRADDP-202ENST00000641269 1585 ntBASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
TRIM39Q9HCM9 AFF3-201ENST00000317233 8135 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 CCDC117-205ENST00000448492 3937 ntTSL 2 BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 CAMKV-209ENST00000477224 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 UBE2V1-224ENST00000625172 2297 ntTSL 4 BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 AC072061.1-201ENST00000569710 2234 ntBASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 DDC-204ENST00000426377 1700 ntTSL 3 BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 RIDA-201ENST00000254878 1057 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 PLA2G12B-201ENST00000373032 1128 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 RPL3P2-204ENST00000413027 1203 ntBASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 RPL18AP3-201ENST00000462885 528 ntBASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 PRSS3P1-201ENST00000503996 742 ntBASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 ALG10B-203ENST00000551464 571 ntTSL 3 BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 AC007952.4-201ENST00000573866 637 ntBASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 MIR4706-201ENST00000582134 82 ntBASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC13.74□□□□□ -0.21
TRIM39Q9HCM9 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC13.74□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms