Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LRCH3Q96II8 CWC27-201ENST00000381070 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LRCH3Q96II8 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC14.89□□□□□ -0.03
LRCH3Q96II8 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LRCH3Q96II8 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
LRCH3Q96II8 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
LRCH3Q96II8 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LRCH3Q96II8 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC14.89□□□□□ -0.03
LRCH3Q96II8 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LRCH3Q96II8 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LRCH3Q96II8 CACNB4-201ENST00000201943 1389 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LRCH3Q96II8 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LRCH3Q96II8 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LRCH3Q96II8 AC064850.1-201ENST00000413279 1398 ntBASIC14.89□□□□□ -0.03
LRCH3Q96II8 PDHB-210ENST00000485460 1397 ntTSL 2 BASIC14.89□□□□□ -0.03
LRCH3Q96II8 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
LRCH3Q96II8 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC14.89□□□□□ -0.03
LRCH3Q96II8 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
LRCH3Q96II8 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC14.89□□□□□ -0.03
LRCH3Q96II8 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LRCH3Q96II8 NANOS3-202ENST00000397555 769 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
LRCH3Q96II8 MPV17-209ENST00000405983 859 ntTSL 5 BASIC14.89□□□□□ -0.03
LRCH3Q96II8 PDZD9-201ENST00000424898 1260 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
LRCH3Q96II8 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC14.89□□□□□ -0.03
LRCH3Q96II8 AC012513.2-201ENST00000441511 1137 ntBASIC14.89□□□□□ -0.03
LRCH3Q96II8 QTRT2-209ENST00000479882 1196 ntTSL 2 BASIC14.89□□□□□ -0.03
LRCH3Q96II8 AC246817.2-204ENST00000517984 562 ntTSL 4 BASIC14.89□□□□□ -0.03
LRCH3Q96II8 AC078923.1-201ENST00000552856 748 ntTSL 3 BASIC14.89□□□□□ -0.03
LRCH3Q96II8 PEX11A-204ENST00000561224 529 ntTSL 4 BASIC14.89□□□□□ -0.03
LRCH3Q96II8 AC142381.4-201ENST00000566806 702 ntTSL 3 BASIC14.89□□□□□ -0.03
LRCH3Q96II8 AC142086.5-201ENST00000567619 702 ntTSL 5 BASIC14.89□□□□□ -0.03
LRCH3Q96II8 PMM2-216ENST00000569958 698 ntTSL 2 BASIC14.89□□□□□ -0.03
LRCH3Q96II8 RN7SL455P-201ENST00000580629 282 ntBASIC14.89□□□□□ -0.03
LRCH3Q96II8 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
LRCH3Q96II8 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC14.89□□□□□ -0.03
LRCH3Q96II8 AC116631.1-201ENST00000640685 576 ntTSL 5 BASIC14.89□□□□□ -0.03
LRCH3Q96II8 AC015656.1-201ENST00000624209 3578 ntBASIC14.89□□□□□ -0.03
LRCH3Q96II8 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
LRCH3Q96II8 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
LRCH3Q96II8 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LRCH3Q96II8 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
LRCH3Q96II8 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC14.89□□□□□ -0.03
LRCH3Q96II8 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
LRCH3Q96II8 NAAA-203ENST00000505594 1425 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
LRCH3Q96II8 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC14.89□□□□□ -0.03
LRCH3Q96II8 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
LRCH3Q96II8 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
LRCH3Q96II8 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LRCH3Q96II8 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LRCH3Q96II8 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
LRCH3Q96II8 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LRCH3Q96II8 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LRCH3Q96II8 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC14.89□□□□□ -0.03
LRCH3Q96II8 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LRCH3Q96II8 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LRCH3Q96II8 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LRCH3Q96II8 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LRCH3Q96II8 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LRCH3Q96II8 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC14.88□□□□□ -0.03
LRCH3Q96II8 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC14.88□□□□□ -0.03
LRCH3Q96II8 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LRCH3Q96II8 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LRCH3Q96II8 TCL1A-201ENST00000402399 1395 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LRCH3Q96II8 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
LRCH3Q96II8 RUSC1-AS1-202ENST00000446880 1836 ntTSL 2 BASIC14.88□□□□□ -0.03
LRCH3Q96II8 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
LRCH3Q96II8 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
LRCH3Q96II8 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
LRCH3Q96II8 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
LRCH3Q96II8 SPINK2-201ENST00000248701 613 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
LRCH3Q96II8 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LRCH3Q96II8 RPS6-201ENST00000315377 863 ntTSL 3 BASIC14.88□□□□□ -0.03
LRCH3Q96II8 CAV2-202ENST00000343213 776 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LRCH3Q96II8 LSM2-208ENST00000375661 876 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LRCH3Q96II8 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC14.88□□□□□ -0.03
LRCH3Q96II8 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC14.88□□□□□ -0.03
LRCH3Q96II8 PRSS46-201ENST00000463091 982 ntAPPRIS P1 TSL 4 BASIC14.88□□□□□ -0.03
LRCH3Q96II8 PARVG-208ENST00000466375 820 ntTSL 2 BASIC14.88□□□□□ -0.03
LRCH3Q96II8 AC104115.1-201ENST00000484005 623 ntBASIC14.88□□□□□ -0.03
LRCH3Q96II8 AC140125.3-202ENST00000504362 348 ntTSL 3 BASIC14.88□□□□□ -0.03
LRCH3Q96II8 AC138965.1-201ENST00000509329 348 ntTSL 3 BASIC14.88□□□□□ -0.03
LRCH3Q96II8 AACSP1-202ENST00000521412 1095 ntBASIC14.88□□□□□ -0.03
LRCH3Q96II8 AC004923.4-201ENST00000532296 739 ntTSL 3 BASIC14.88□□□□□ -0.03
LRCH3Q96II8 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LRCH3Q96II8 CD276-217ENST00000564751 951 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LRCH3Q96II8 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LRCH3Q96II8 AL031768.1-201ENST00000606542 701 ntBASIC14.88□□□□□ -0.03
LRCH3Q96II8 AL353581.1-201ENST00000606916 1224 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LRCH3Q96II8 AC005609.1-201ENST00000625195 617 ntTSL 5 BASIC14.88□□□□□ -0.03
LRCH3Q96II8 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
LRCH3Q96II8 KRT8P38-201ENST00000441370 1430 ntBASIC14.88□□□□□ -0.03
LRCH3Q96II8 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LRCH3Q96II8 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC14.88□□□□□ -0.03
LRCH3Q96II8 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC14.88□□□□□ -0.03
LRCH3Q96II8 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC14.88□□□□□ -0.03
LRCH3Q96II8 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LRCH3Q96II8 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC14.88□□□□□ -0.03
LRCH3Q96II8 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LRCH3Q96II8 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
LRCH3Q96II8 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms