Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 TRIT1-202ENST00000372818 2034 ntTSL 1 (best) BASIC8.81□□□□□ -1
VPS13DQ5THJ4 LTF-203ENST00000426532 2494 ntTSL 2 BASIC8.81□□□□□ -1
VPS13DQ5THJ4 AC004623.1-201ENST00000624592 2127 ntBASIC8.81□□□□□ -1
VPS13DQ5THJ4 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
VPS13DQ5THJ4 TMEM106A-204ENST00000588659 1437 ntAPPRIS P1 TSL 2 BASIC8.81□□□□□ -1
VPS13DQ5THJ4 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC8.81□□□□□ -1
VPS13DQ5THJ4 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
VPS13DQ5THJ4 SYCE1-201ENST00000303903 1011 ntAPPRIS ALT2 TSL 1 (best) BASIC8.81□□□□□ -1
VPS13DQ5THJ4 OR2T34-201ENST00000328782 957 ntAPPRIS P1 BASIC8.81□□□□□ -1
VPS13DQ5THJ4 OR2T3-201ENST00000359594 957 ntAPPRIS P1 BASIC8.81□□□□□ -1
VPS13DQ5THJ4 MIR324-201ENST00000362183 83 ntBASIC8.81□□□□□ -1
VPS13DQ5THJ4 SUSD3-201ENST00000375469 1114 ntAPPRIS ALT2 TSL 5 BASIC8.81□□□□□ -1
VPS13DQ5THJ4 C20orf141-201ENST00000380589 730 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
VPS13DQ5THJ4 RPP30-203ENST00000413330 1004 ntTSL 5 BASIC8.81□□□□□ -1
VPS13DQ5THJ4 AC046143.1-201ENST00000447139 972 ntTSL 2 BASIC8.81□□□□□ -1
VPS13DQ5THJ4 AC106748.1-201ENST00000454801 384 ntBASIC8.81□□□□□ -1
VPS13DQ5THJ4 RN7SL105P-201ENST00000475661 299 ntBASIC8.81□□□□□ -1
VPS13DQ5THJ4 AC103706.1-201ENST00000561761 679 ntBASIC8.81□□□□□ -1
VPS13DQ5THJ4 AC009061.2-202ENST00000602596 696 ntTSL 2 BASIC8.81□□□□□ -1
VPS13DQ5THJ4 PSMG3-AS1-207ENST00000612019 586 ntTSL 4 BASIC8.81□□□□□ -1
VPS13DQ5THJ4 APOBEC3A-205ENST00000618553 1103 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
VPS13DQ5THJ4 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
VPS13DQ5THJ4 OAS1-201ENST00000202917 1816 ntAPPRIS ALT2 TSL 1 (best) BASIC8.81□□□□□ -1
VPS13DQ5THJ4 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC8.81□□□□□ -1
VPS13DQ5THJ4 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC8.81□□□□□ -1
VPS13DQ5THJ4 OSER1-AS1-202ENST00000437730 1563 ntTSL 5 BASIC8.81□□□□□ -1
VPS13DQ5THJ4 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC8.81□□□□□ -1
VPS13DQ5THJ4 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC8.81□□□□□ -1
VPS13DQ5THJ4 SEM1-201ENST00000248566 1314 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
VPS13DQ5THJ4 AC124944.3-201ENST00000607976 1304 ntBASIC8.81□□□□□ -1
VPS13DQ5THJ4 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC8.81□□□□□ -1
VPS13DQ5THJ4 LINC01115-202ENST00000621134 1519 ntTSL 1 (best) BASIC8.81□□□□□ -1
VPS13DQ5THJ4 SRPRA-201ENST00000332118 3069 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
VPS13DQ5THJ4 TEPP-201ENST00000290871 1079 ntAPPRIS P3 TSL 1 (best) BASIC8.81□□□□□ -1
VPS13DQ5THJ4 RN7SL487P-201ENST00000468140 344 ntBASIC8.81□□□□□ -1
VPS13DQ5THJ4 KRT16P4-202ENST00000580052 362 ntTSL 3 BASIC8.81□□□□□ -1
VPS13DQ5THJ4 AC010335.3-201ENST00000623767 531 ntBASIC8.81□□□□□ -1
VPS13DQ5THJ4 RNF4-216ENST00000511859 1373 ntTSL 1 (best) BASIC8.81□□□□□ -1
VPS13DQ5THJ4 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC8.81□□□□□ -1
VPS13DQ5THJ4 SNCAIP-203ENST00000379538 2588 ntTSL 1 (best) BASIC8.81□□□□□ -1
VPS13DQ5THJ4 AXL-203ENST00000593513 2557 ntTSL 1 (best) BASIC8.81□□□□□ -1
VPS13DQ5THJ4 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC8.81□□□□□ -1
VPS13DQ5THJ4 TMEM182-202ENST00000409528 3112 ntTSL 1 (best) BASIC8.81□□□□□ -1
VPS13DQ5THJ4 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
VPS13DQ5THJ4 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC8.81□□□□□ -1
VPS13DQ5THJ4 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC8.8□□□□□ -1
VPS13DQ5THJ4 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC8.8□□□□□ -1
VPS13DQ5THJ4 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC8.8□□□□□ -1
VPS13DQ5THJ4 OLAH-203ENST00000378228 1675 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
VPS13DQ5THJ4 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC8.8□□□□□ -1
VPS13DQ5THJ4 TUBAP-201ENST00000425085 1352 ntBASIC8.8□□□□□ -1
VPS13DQ5THJ4 ABCD3-201ENST00000315713 884 ntTSL 1 (best) BASIC8.8□□□□□ -1
VPS13DQ5THJ4 LY6G6F-201ENST00000375832 920 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
VPS13DQ5THJ4 TRIM15-206ENST00000376688 426 ntTSL 5 BASIC8.8□□□□□ -1
VPS13DQ5THJ4 ZNRD1-204ENST00000376785 754 ntAPPRIS P1 TSL 2 BASIC8.8□□□□□ -1
VPS13DQ5THJ4 APTX-203ENST00000379813 1121 ntTSL 5 BASIC8.8□□□□□ -1
VPS13DQ5THJ4 AC064836.1-201ENST00000405197 704 ntBASIC8.8□□□□□ -1
VPS13DQ5THJ4 APTX-220ENST00000476858 1068 ntTSL 1 (best) BASIC8.8□□□□□ -1
VPS13DQ5THJ4 LUCAT1-201ENST00000511918 828 ntTSL 3 BASIC8.8□□□□□ -1
VPS13DQ5THJ4 GABARAPL1-203ENST00000535576 792 ntTSL 5 BASIC8.8□□□□□ -1
VPS13DQ5THJ4 CD74-201ENST00000009530 981 ntAPPRIS P2 TSL 2 BASIC8.8□□□□□ -1
VPS13DQ5THJ4 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC8.8□□□□□ -1
VPS13DQ5THJ4 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC8.8□□□□□ -1
VPS13DQ5THJ4 FAM200A-202ENST00000449309 2480 ntAPPRIS P2 TSL 1 (best) BASIC8.8□□□□□ -1
VPS13DQ5THJ4 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
VPS13DQ5THJ4 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC8.8□□□□□ -1
VPS13DQ5THJ4 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC8.8□□□□□ -1
VPS13DQ5THJ4 RGPD4-AS1-202ENST00000457647 1792 ntTSL 1 (best) BASIC8.8□□□□□ -1
VPS13DQ5THJ4 CNN2-202ENST00000348419 2033 ntTSL 2 BASIC8.8□□□□□ -1
VPS13DQ5THJ4 AC126564.1-201ENST00000623628 2013 ntBASIC8.8□□□□□ -1
VPS13DQ5THJ4 LINC00940-201ENST00000418006 2350 ntTSL 2 BASIC8.8□□□□□ -1
VPS13DQ5THJ4 CXorf40A-212ENST00000514208 1840 ntAPPRIS ALT1 TSL 5 BASIC8.8□□□□□ -1
VPS13DQ5THJ4 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC8.8□□□□□ -1
VPS13DQ5THJ4 AC240565.1-201ENST00000624936 1373 ntTSL 5 BASIC8.8□□□□□ -1
VPS13DQ5THJ4 SPINK2-201ENST00000248701 613 ntAPPRIS P3 TSL 1 (best) BASIC8.8□□□□□ -1
VPS13DQ5THJ4 SPACA5-201ENST00000304355 648 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
VPS13DQ5THJ4 MAP1LC3BP1-202ENST00000438342 516 ntTSL 3 BASIC8.8□□□□□ -1
VPS13DQ5THJ4 PRKRIP1-202ENST00000462601 884 ntTSL 2 BASIC8.8□□□□□ -1
VPS13DQ5THJ4 AL355987.2-201ENST00000471502 561 ntTSL 4 BASIC8.8□□□□□ -1
VPS13DQ5THJ4 ST3GAL1P1-201ENST00000513810 1014 ntBASIC8.8□□□□□ -1
VPS13DQ5THJ4 AC093072.1-201ENST00000589196 602 ntTSL 4 BASIC8.8□□□□□ -1
VPS13DQ5THJ4 MIR663AHG-218ENST00000598448 804 ntTSL 5 BASIC8.8□□□□□ -1
VPS13DQ5THJ4 C2orf27AP1-201ENST00000618128 586 ntBASIC8.8□□□□□ -1
VPS13DQ5THJ4 MIR6819-201ENST00000622122 61 ntBASIC8.8□□□□□ -1
VPS13DQ5THJ4 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC8.8□□□□□ -1
VPS13DQ5THJ4 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
VPS13DQ5THJ4 MAGED2-207ENST00000396224 2026 ntAPPRIS P2 TSL 5 BASIC8.8□□□□□ -1
VPS13DQ5THJ4 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC8.8□□□□□ -1
VPS13DQ5THJ4 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC8.8□□□□□ -1
VPS13DQ5THJ4 RAB15-201ENST00000267512 3391 ntTSL 1 (best) BASIC8.8□□□□□ -1
VPS13DQ5THJ4 ALOX15P2-201ENST00000340858 1897 ntBASIC8.8□□□□□ -1
VPS13DQ5THJ4 CCDC149-208ENST00000635206 2362 ntAPPRIS ALT2 TSL 5 BASIC8.8□□□□□ -1
VPS13DQ5THJ4 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
VPS13DQ5THJ4 MAP3K12-203ENST00000547035 2944 ntAPPRIS ALT2 TSL 5 BASIC8.8□□□□□ -1
VPS13DQ5THJ4 FRG1-201ENST00000226798 1074 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
VPS13DQ5THJ4 CD74-203ENST00000377795 1138 ntTSL 1 (best) BASIC8.8□□□□□ -1
VPS13DQ5THJ4 ARF1P2-201ENST00000392493 538 ntBASIC8.8□□□□□ -1
VPS13DQ5THJ4 AL031058.1-201ENST00000561592 888 ntBASIC8.8□□□□□ -1
VPS13DQ5THJ4 RN7SL732P-201ENST00000581157 300 ntBASIC8.8□□□□□ -1
VPS13DQ5THJ4 BX547991.1-201ENST00000582543 1206 ntTSL 1 (best) BASIC8.8□□□□□ -1
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms