Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
COL28A1Q2UY09 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 ZNF202-206ENST00000529691 3384 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 AC011498.7-201ENST00000624986 2027 ntBASIC13.34□□□□□ -0.27
COL28A1Q2UY09 CYP4F3-201ENST00000221307 5050 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 CSHL1-201ENST00000259003 739 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 MRPL33-201ENST00000296102 518 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 IL1F10-201ENST00000341010 1013 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 LINC01983-201ENST00000413586 574 ntTSL 2 BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 MED15P3-201ENST00000413613 326 ntBASIC13.34□□□□□ -0.27
COL28A1Q2UY09 PGAM1P11-201ENST00000416729 680 ntBASIC13.34□□□□□ -0.27
COL28A1Q2UY09 IFNWP2-201ENST00000431203 580 ntBASIC13.34□□□□□ -0.27
COL28A1Q2UY09 RPL15-208ENST00000435882 1063 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 PLSCR1-202ENST00000448787 996 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 CSHL1-206ENST00000450719 973 ntTSL 2 BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 PEBP1P3-201ENST00000455475 548 ntBASIC13.34□□□□□ -0.27
COL28A1Q2UY09 AC026412.1-206ENST00000502273 206 ntBASIC13.34□□□□□ -0.27
COL28A1Q2UY09 SEPHS2P1-201ENST00000511618 1162 ntBASIC13.34□□□□□ -0.27
COL28A1Q2UY09 IGHVIII-5-2-201ENST00000522505 261 ntBASIC13.34□□□□□ -0.27
COL28A1Q2UY09 AP000920.1-201ENST00000531824 344 ntBASIC13.34□□□□□ -0.27
COL28A1Q2UY09 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 AP001094.3-201ENST00000580491 616 ntTSL 2 BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 AC005786.2-201ENST00000592368 369 ntTSL 3 BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 KLKP1-202ENST00000597246 1125 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 AL451165.2-201ENST00000606971 718 ntTSL 2 BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC13.34□□□□□ -0.27
COL28A1Q2UY09 LINC01398-202ENST00000634819 1292 ntTSL 5 BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 HTR3D-201ENST00000334128 1459 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 SIGLEC20P-201ENST00000595243 1311 ntBASIC13.34□□□□□ -0.27
COL28A1Q2UY09 AC090505.1-201ENST00000430515 1834 ntBASIC13.34□□□□□ -0.27
COL28A1Q2UY09 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 OXSM-201ENST00000280701 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL28A1Q2UY09 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
COL28A1Q2UY09 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC13.33□□□□□ -0.27
COL28A1Q2UY09 AL591122.2-201ENST00000624125 1853 ntBASIC13.33□□□□□ -0.27
COL28A1Q2UY09 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
COL28A1Q2UY09 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
COL28A1Q2UY09 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
COL28A1Q2UY09 DYRK1B-202ENST00000348817 2448 ntTSL 5 BASIC13.33□□□□□ -0.27
COL28A1Q2UY09 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC13.33□□□□□ -0.27
COL28A1Q2UY09 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
COL28A1Q2UY09 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 Z82170.1-201ENST00000625081 3192 ntBASIC13.33□□□□□ -0.28
COL28A1Q2UY09 KCTD6-205ENST00000490264 1759 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 AL731571.1-201ENST00000617058 5428 ntBASIC13.33□□□□□ -0.28
COL28A1Q2UY09 PGLYRP3-201ENST00000290722 1173 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 AL080243.1-201ENST00000423293 1060 ntBASIC13.33□□□□□ -0.28
COL28A1Q2UY09 AC136604.1-202ENST00000425471 771 ntBASIC13.33□□□□□ -0.28
COL28A1Q2UY09 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 AL356000.1-201ENST00000441073 1238 ntBASIC13.33□□□□□ -0.28
COL28A1Q2UY09 FOXP4-AS1-205ENST00000454812 575 ntTSL 2 BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 RN7SL147P-201ENST00000487345 298 ntBASIC13.33□□□□□ -0.28
COL28A1Q2UY09 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 MIR2278-201ENST00000516344 96 ntBASIC13.33□□□□□ -0.28
COL28A1Q2UY09 AAMDC-207ENST00000527134 693 ntTSL 3 BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 F11R-204ENST00000537746 1245 ntTSL 2 BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 INO80E-209ENST00000567254 625 ntTSL 2 BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 COX5A-205ENST00000568517 582 ntTSL 3 BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 GAS7-216ENST00000583882 553 ntTSL 5 BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 CBR3-AS1-206ENST00000608632 659 ntTSL 5 BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 AL513478.2-202ENST00000621949 835 ntTSL 3 BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC13.33□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms