Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 NAP1L6-202ENST00000641404 1222 ntBASIC13.35□□□□□ -0.27
FOXA1P55317 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC13.35□□□□□ -0.27
FOXA1P55317 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
FOXA1P55317 WASHC2C-210ENST00000623400 4616 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA1P55317 AL031432.4-201ENST00000641729 2190 ntBASIC13.35□□□□□ -0.27
FOXA1P55317 PEG13-201ENST00000631594 5667 ntBASIC13.35□□□□□ -0.27
FOXA1P55317 GRIA4-210ENST00000527669 2647 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA1P55317 ZNF595-205ENST00000610261 2911 ntAPPRIS P4 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA1P55317 INCENP-202ENST00000394818 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA1P55317 GRN-222ENST00000639447 1314 ntTSL 2 BASIC13.35□□□□□ -0.27
FOXA1P55317 TMPRSS4-213ENST00000522824 2052 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA1P55317 AL022323.5-201ENST00000624101 2059 ntBASIC13.35□□□□□ -0.27
FOXA1P55317 DAXX-203ENST00000414083 2355 ntTSL 2 BASIC13.35□□□□□ -0.27
FOXA1P55317 COL6A2-204ENST00000409416 3430 ntTSL 5 BASIC13.35□□□□□ -0.27
FOXA1P55317 KCNS2-202ENST00000521839 4340 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
FOXA1P55317 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC13.35□□□□□ -0.27
FOXA1P55317 FAM122B-203ENST00000370790 4246 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA1P55317 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC13.34□□□□□ -0.27
FOXA1P55317 UBTF-209ENST00000529383 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA1P55317 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
FOXA1P55317 PGAM1P5-202ENST00000552554 2148 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA1P55317 GABRR2-201ENST00000402938 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA1P55317 RMND5B-212ENST00000542098 1681 ntTSL 5 BASIC13.34□□□□□ -0.27
FOXA1P55317 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA1P55317 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC13.34□□□□□ -0.27
FOXA1P55317 STAT3-202ENST00000389272 2615 ntTSL 2 BASIC13.34□□□□□ -0.27
FOXA1P55317 AL390066.1-201ENST00000456414 2302 ntTSL 2 BASIC13.34□□□□□ -0.27
FOXA1P55317 AL031056.1-202ENST00000635954 2193 ntTSL 5 BASIC13.34□□□□□ -0.27
FOXA1P55317 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA1P55317 NLRP2-202ENST00000339757 3422 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
FOXA1P55317 AMDHD2-202ENST00000302956 3273 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA1P55317 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
FOXA1P55317 CARHSP1-217ENST00000611932 2833 ntAPPRIS P1 TSL 3 BASIC13.34□□□□□ -0.27
FOXA1P55317 NME7-203ENST00000472647 1590 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
FOXA1P55317 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA1P55317 ZNF200-205ENST00000431561 3348 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA1P55317 DPY19L2P2-205ENST00000439473 3994 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA1P55317 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
FOXA1P55317 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA1P55317 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA1P55317 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC13.34□□□□□ -0.27
FOXA1P55317 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC13.34□□□□□ -0.27
FOXA1P55317 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA1P55317 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA1P55317 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC13.34□□□□□ -0.27
FOXA1P55317 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC13.34□□□□□ -0.27
FOXA1P55317 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
FOXA1P55317 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC13.34□□□□□ -0.27
FOXA1P55317 AC100757.4-201ENST00000626934 759 ntBASIC13.34□□□□□ -0.27
FOXA1P55317 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA1P55317 AL805961.1-203ENST00000641078 1258 ntBASIC13.34□□□□□ -0.27
FOXA1P55317 SCAF4-201ENST00000286835 4193 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA1P55317 PIK3R1-213ENST00000521657 3891 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
FOXA1P55317 ZNF771-204ENST00000566625 2415 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA1P55317 TNFRSF21-201ENST00000296861 3595 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA1P55317 ZNF564-201ENST00000339282 2935 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA1P55317 ARRDC5-201ENST00000381781 1638 ntAPPRIS P1 TSL 3 BASIC13.34□□□□□ -0.27
FOXA1P55317 CAPRIN1-212ENST00000532820 3438 ntAPPRIS P4 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA1P55317 AAR2-203ENST00000397286 1466 ntTSL 5 BASIC13.34□□□□□ -0.27
FOXA1P55317 ZNF185-205ENST00000370270 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA1P55317 FTSJ1-203ENST00000396894 1669 ntTSL 2 BASIC13.34□□□□□ -0.27
FOXA1P55317 FHOD3-207ENST00000591635 3035 ntTSL 5 BASIC13.34□□□□□ -0.27
FOXA1P55317 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
FOXA1P55317 NHEJ1-201ENST00000356853 2094 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
FOXA1P55317 TKFC-201ENST00000394900 4696 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
FOXA1P55317 RBM10-206ENST00000628161 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.27
FOXA1P55317 TNFRSF8-201ENST00000263932 3686 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA1P55317 SLCO2A1-208ENST00000493729 1918 ntTSL 5 BASIC13.33□□□□□ -0.28
FOXA1P55317 SRP72-205ENST00000510663 2473 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA1P55317 KLHL24-211ENST00000476808 2126 ntTSL 2 BASIC13.33□□□□□ -0.28
FOXA1P55317 ALDOA-202ENST00000395240 1447 ntAPPRIS ALT1 TSL 5 BASIC13.33□□□□□ -0.28
FOXA1P55317 MICB-202ENST00000399150 2346 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA1P55317 AC104129.1-202ENST00000480694 4481 ntTSL 2 BASIC13.33□□□□□ -0.28
FOXA1P55317 COPS7B-201ENST00000350033 2544 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA1P55317 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA1P55317 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA1P55317 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA1P55317 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA1P55317 AC106827.1-201ENST00000366454 431 ntBASIC13.33□□□□□ -0.28
FOXA1P55317 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
FOXA1P55317 NME4-203ENST00000397722 1232 ntTSL 2 BASIC13.33□□□□□ -0.28
FOXA1P55317 MIR1908-201ENST00000410394 80 ntBASIC13.33□□□□□ -0.28
FOXA1P55317 EEF1DP2-201ENST00000433698 843 ntBASIC13.33□□□□□ -0.28
FOXA1P55317 NAGK-204ENST00000443872 878 ntTSL 3 BASIC13.33□□□□□ -0.28
FOXA1P55317 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA1P55317 AC004898.1-201ENST00000451057 766 ntBASIC13.33□□□□□ -0.28
FOXA1P55317 AC095040.1-201ENST00000513286 675 ntBASIC13.33□□□□□ -0.28
FOXA1P55317 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC13.33□□□□□ -0.28
FOXA1P55317 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA1P55317 NOP2-220ENST00000545915 630 ntTSL 2 BASIC13.33□□□□□ -0.28
FOXA1P55317 ADSSL1-208ENST00000555674 520 ntTSL 3 BASIC13.33□□□□□ -0.28
FOXA1P55317 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC13.33□□□□□ -0.28
FOXA1P55317 MIR4326-201ENST00000582203 59 ntBASIC13.33□□□□□ -0.28
FOXA1P55317 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC13.33□□□□□ -0.28
FOXA1P55317 Six3os1_5.1-201ENST00000611000 271 ntBASIC13.33□□□□□ -0.28
FOXA1P55317 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
FOXA1P55317 GARS-210ENST00000627489 324 ntTSL 4 BASIC13.33□□□□□ -0.28
FOXA1P55317 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA1P55317 GOLGA2P5-201ENST00000266746 2395 ntBASIC13.33□□□□□ -0.28
FOXA1P55317 SIRPA-203ENST00000400068 4201 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 75.3 ms