Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 RAPGEF6-207ENST00000507093 5742 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLK1P49759 AR-208ENST00000612452 10676 ntTSL 5 BASIC13.11□□□□□ -0.31
CLK1P49759 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC13.11□□□□□ -0.31
CLK1P49759 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLK1P49759 RPF1-202ENST00000370656 724 ntTSL 2 BASIC13.11□□□□□ -0.31
CLK1P49759 MBP-208ENST00000397866 2145 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLK1P49759 HNRNPA1P63-201ENST00000427917 963 ntBASIC13.11□□□□□ -0.31
CLK1P49759 ST13P19-201ENST00000442505 1124 ntBASIC13.11□□□□□ -0.31
CLK1P49759 PFN1P12-201ENST00000455938 534 ntBASIC13.11□□□□□ -0.31
CLK1P49759 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC13.11□□□□□ -0.31
CLK1P49759 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC13.11□□□□□ -0.31
CLK1P49759 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC13.11□□□□□ -0.31
CLK1P49759 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC13.11□□□□□ -0.31
CLK1P49759 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC13.11□□□□□ -0.31
CLK1P49759 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC13.11□□□□□ -0.31
CLK1P49759 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC13.11□□□□□ -0.31
CLK1P49759 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC13.11□□□□□ -0.31
CLK1P49759 AL008721.1-201ENST00000609964 604 ntBASIC13.11□□□□□ -0.31
CLK1P49759 AL136295.7-201ENST00000619226 1200 ntBASIC13.11□□□□□ -0.31
CLK1P49759 AC133540.1-201ENST00000620845 1019 ntBASIC13.11□□□□□ -0.31
CLK1P49759 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC13.11□□□□□ -0.31
CLK1P49759 TMPRSS13-202ENST00000445164 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLK1P49759 AC021752.1-202ENST00000613161 2398 ntTSL 2 BASIC13.11□□□□□ -0.31
CLK1P49759 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLK1P49759 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CLK1P49759 DPYSL5-201ENST00000288699 5209 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLK1P49759 LINC02486-201ENST00000604157 3000 ntBASIC13.11□□□□□ -0.31
CLK1P49759 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC13.11□□□□□ -0.31
CLK1P49759 AC144522.1-201ENST00000625111 1658 ntBASIC13.11□□□□□ -0.31
CLK1P49759 HTR5A-201ENST00000287907 2912 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLK1P49759 POU5F2-201ENST00000606183 8418 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
CLK1P49759 NXF1-201ENST00000294172 2346 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLK1P49759 DNAL1-201ENST00000311089 2312 ntTSL 2 BASIC13.11□□□□□ -0.31
CLK1P49759 PGAP2-203ENST00000396986 1837 ntTSL 2 BASIC13.11□□□□□ -0.31
CLK1P49759 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLK1P49759 AHCYP4-201ENST00000419201 1315 ntBASIC13.11□□□□□ -0.31
CLK1P49759 AC005014.1-201ENST00000432006 2976 ntBASIC13.11□□□□□ -0.31
CLK1P49759 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC13.1□□□□□ -0.31
CLK1P49759 SLC6A19-201ENST00000304460 5174 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLK1P49759 FAS-202ENST00000352159 1722 ntTSL 5 BASIC13.1□□□□□ -0.31
CLK1P49759 MARK2P9-201ENST00000430958 1727 ntBASIC13.1□□□□□ -0.31
CLK1P49759 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
CLK1P49759 PPARGC1B-202ENST00000360453 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLK1P49759 GPR161-209ENST00000539777 7655 ntTSL 2 BASIC13.1□□□□□ -0.31
CLK1P49759 TBC1D26-201ENST00000437605 1868 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
CLK1P49759 TBC1D2-204ENST00000375066 3198 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CLK1P49759 KIF17-202ENST00000375044 3572 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CLK1P49759 CHD4-211ENST00000544484 6554 ntTSL 2 BASIC13.1□□□□□ -0.31
CLK1P49759 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC13.1□□□□□ -0.31
CLK1P49759 ZNF426-204ENST00000593003 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLK1P49759 PTCD1-201ENST00000292478 5582 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLK1P49759 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
CLK1P49759 MAGEL2-201ENST00000532292 4298 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
CLK1P49759 MTMR11-201ENST00000369140 2324 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
CLK1P49759 BRSK2-207ENST00000528710 3528 ntTSL 2 BASIC13.1□□□□□ -0.31
CLK1P49759 UBN1-202ENST00000396658 6336 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLK1P49759 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC13.1□□□□□ -0.31
CLK1P49759 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLK1P49759 NGLY1-205ENST00000417874 2062 ntTSL 2 BASIC13.1□□□□□ -0.31
CLK1P49759 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLK1P49759 RPS3-201ENST00000278572 907 ntTSL 3 BASIC13.1□□□□□ -0.31
CLK1P49759 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC13.1□□□□□ -0.31
CLK1P49759 AC016730.1-201ENST00000420828 832 ntTSL 2 BASIC13.1□□□□□ -0.31
CLK1P49759 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC13.1□□□□□ -0.31
CLK1P49759 PTPA-218ENST00000435132 618 ntTSL 2 BASIC13.1□□□□□ -0.31
CLK1P49759 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC13.1□□□□□ -0.31
CLK1P49759 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CLK1P49759 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC13.1□□□□□ -0.31
CLK1P49759 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC13.1□□□□□ -0.31
CLK1P49759 RIT1-205ENST00000539040 919 ntTSL 2 BASIC13.1□□□□□ -0.31
CLK1P49759 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC13.1□□□□□ -0.31
CLK1P49759 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC13.1□□□□□ -0.31
CLK1P49759 AL160314.3-201ENST00000556041 767 ntBASIC13.1□□□□□ -0.31
CLK1P49759 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC13.1□□□□□ -0.31
CLK1P49759 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CLK1P49759 AC104982.3-201ENST00000581995 514 ntBASIC13.1□□□□□ -0.31
CLK1P49759 AC021016.3-201ENST00000608367 477 ntBASIC13.1□□□□□ -0.31
CLK1P49759 AL096828.3-201ENST00000615354 462 ntBASIC13.1□□□□□ -0.31
CLK1P49759 MSH2-206ENST00000543555 3024 ntTSL 2 BASIC13.1□□□□□ -0.31
CLK1P49759 UGGT2-201ENST00000376712 2240 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CLK1P49759 ARAP3-207ENST00000626478 4928 ntTSL 5 BASIC13.1□□□□□ -0.31
CLK1P49759 LINC01019-201ENST00000505443 3199 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CLK1P49759 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLK1P49759 RAB42-201ENST00000373826 1950 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CLK1P49759 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
CLK1P49759 FN1-201ENST00000323926 8708 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CLK1P49759 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLK1P49759 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC13.1□□□□□ -0.31
CLK1P49759 SLIT2-204ENST00000504154 6390 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLK1P49759 PRAME-202ENST00000398743 2196 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLK1P49759 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC13.1□□□□□ -0.31
CLK1P49759 PSMD12-201ENST00000356126 4406 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLK1P49759 CACNB1-202ENST00000394303 3742 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
CLK1P49759 CUL4A-203ENST00000375441 4037 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CLK1P49759 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CLK1P49759 CAMK2A-201ENST00000348628 5322 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CLK1P49759 SLC7A8-205ENST00000453702 1752 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CLK1P49759 TACC2-209ENST00000369004 3667 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CLK1P49759 PRPF38A-201ENST00000257181 5274 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CLK1P49759 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms