Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 ELP2-221ENST00000542824 2288 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
MRE11P49959 PPFIBP1-215ENST00000542629 3208 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
MRE11P49959 PEAR1-202ENST00000338302 4970 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
MRE11P49959 PRTFDC1-201ENST00000320152 1944 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MRE11P49959 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MRE11P49959 APOD-201ENST00000343267 1130 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
MRE11P49959 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
MRE11P49959 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MRE11P49959 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC16.24■□□□□ 0.19
MRE11P49959 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC16.24■□□□□ 0.19
MRE11P49959 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC16.24■□□□□ 0.19
MRE11P49959 AC104784.1-201ENST00000473096 294 ntBASIC16.24■□□□□ 0.19
MRE11P49959 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC16.24■□□□□ 0.19
MRE11P49959 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC16.24■□□□□ 0.19
MRE11P49959 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC16.24■□□□□ 0.19
MRE11P49959 AC107373.2-201ENST00000607735 490 ntBASIC16.24■□□□□ 0.19
MRE11P49959 BHMT-201ENST00000274353 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MRE11P49959 CCDC18-203ENST00000401026 4552 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
MRE11P49959 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
MRE11P49959 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MRE11P49959 ATG7-201ENST00000354449 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MRE11P49959 SLC16A2-201ENST00000587091 4161 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MRE11P49959 AC010536.1-201ENST00000538868 2611 ntBASIC16.24■□□□□ 0.19
MRE11P49959 DTX2P1-UPK3BP1-PMS2P11-203ENST00000636308 4646 ntTSL 5 BASIC16.24■□□□□ 0.19
MRE11P49959 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MRE11P49959 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
MRE11P49959 AL355336.1-201ENST00000451355 1676 ntTSL 2 BASIC16.24■□□□□ 0.19
MRE11P49959 AC020917.4-201ENST00000623994 1999 ntBASIC16.24■□□□□ 0.19
MRE11P49959 MICA-210ENST00000616296 2260 ntTSL 5 BASIC16.24■□□□□ 0.19
MRE11P49959 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
MRE11P49959 HMBOX1-203ENST00000397358 4082 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MRE11P49959 SLC38A7-215ENST00000570101 4549 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
MRE11P49959 TSC22D1-203ENST00000458659 4820 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
MRE11P49959 TRPA1-201ENST00000262209 5223 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
MRE11P49959 GNPNAT1-201ENST00000216410 3860 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
MRE11P49959 TRHDE-AS1-202ENST00000435350 2966 ntTSL 2 BASIC16.23■□□□□ 0.19
MRE11P49959 AGPAT1-203ENST00000375107 2234 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
MRE11P49959 AC000068.1-201ENST00000431090 2097 ntTSL 2 BASIC16.23■□□□□ 0.19
MRE11P49959 NMRAL2P-204ENST00000423298 1792 ntTSL 5 BASIC16.23■□□□□ 0.19
MRE11P49959 FUT8-203ENST00000360689 5166 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
MRE11P49959 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
MRE11P49959 FAM102A-202ENST00000373084 3352 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
MRE11P49959 TRIM11-204ENST00000493030 5774 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
MRE11P49959 C1QTNF9-202ENST00000382071 1854 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
MRE11P49959 AGAP3-205ENST00000463381 2730 ntTSL 2 BASIC16.23■□□□□ 0.19
MRE11P49959 CTAGE10P-201ENST00000318353 2408 ntBASIC16.23■□□□□ 0.19
MRE11P49959 PAAF1-201ENST00000310571 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
MRE11P49959 RPS3-201ENST00000278572 907 ntTSL 3 BASIC16.23■□□□□ 0.19
MRE11P49959 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
MRE11P49959 AC026954.1-201ENST00000429771 1293 ntBASIC16.23■□□□□ 0.19
MRE11P49959 FTLP10-202ENST00000505798 471 ntBASIC16.23■□□□□ 0.19
MRE11P49959 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC16.23■□□□□ 0.19
MRE11P49959 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
MRE11P49959 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC16.23■□□□□ 0.19
MRE11P49959 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC16.23■□□□□ 0.19
MRE11P49959 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC16.23■□□□□ 0.19
MRE11P49959 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC16.23■□□□□ 0.19
MRE11P49959 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC16.23■□□□□ 0.19
MRE11P49959 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC16.23■□□□□ 0.19
MRE11P49959 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC16.23■□□□□ 0.19
MRE11P49959 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC16.23■□□□□ 0.19
MRE11P49959 CU634019.7-201ENST00000624153 1185 ntBASIC16.23■□□□□ 0.19
MRE11P49959 FP236241.2-201ENST00000624906 1185 ntBASIC16.23■□□□□ 0.19
MRE11P49959 SP140L-203ENST00000415673 2665 ntAPPRIS P3 TSL 5 BASIC16.23■□□□□ 0.19
MRE11P49959 TDRD9-202ENST00000409874 4782 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
MRE11P49959 DDX50-201ENST00000373585 2538 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
MRE11P49959 UAP1L1-201ENST00000360271 3201 ntTSL 2 BASIC16.23■□□□□ 0.19
MRE11P49959 LAS1L-202ENST00000374807 2386 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
MRE11P49959 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
MRE11P49959 FCHO1-221ENST00000597512 2934 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
MRE11P49959 IKZF1-206ENST00000359197 3487 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
MRE11P49959 NEK11-209ENST00000510688 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
MRE11P49959 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
MRE11P49959 STAT3-202ENST00000389272 2615 ntTSL 2 BASIC16.23■□□□□ 0.19
MRE11P49959 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
MRE11P49959 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
MRE11P49959 NLRP7-201ENST00000328092 3299 ntAPPRIS P3 TSL 5 BASIC16.23■□□□□ 0.19
MRE11P49959 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
MRE11P49959 PROM2-201ENST00000317620 4728 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
MRE11P49959 AC126564.1-201ENST00000623628 2013 ntBASIC16.23■□□□□ 0.19
MRE11P49959 VPS33B-202ENST00000535906 2420 ntTSL 2 BASIC16.23■□□□□ 0.19
MRE11P49959 PXK-210ENST00000479241 2817 ntTSL 2 BASIC16.23■□□□□ 0.19
MRE11P49959 SARS-201ENST00000234677 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
MRE11P49959 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
MRE11P49959 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
MRE11P49959 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.19
MRE11P49959 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC16.22■□□□□ 0.19
MRE11P49959 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
MRE11P49959 THBS2-201ENST00000366787 5811 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
MRE11P49959 PAX3-205ENST00000392069 3170 ntTSL 5 BASIC16.22■□□□□ 0.19
MRE11P49959 RBL1-202ENST00000373664 5684 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
MRE11P49959 PRAME-201ENST00000398741 2202 ntAPPRIS P2 TSL 5 BASIC16.22■□□□□ 0.19
MRE11P49959 SLC5A8-201ENST00000536262 4178 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
MRE11P49959 SNX1-201ENST00000261889 3373 ntTSL 2 BASIC16.22■□□□□ 0.19
MRE11P49959 AC008764.8-201ENST00000623966 2717 ntBASIC16.22■□□□□ 0.19
MRE11P49959 KSR1-204ENST00000398988 7237 ntAPPRIS P2 TSL 5 BASIC16.22■□□□□ 0.19
MRE11P49959 TJP2-206ENST00000453658 4129 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
MRE11P49959 TXLNA-201ENST00000373609 5012 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
MRE11P49959 DUSP11-202ENST00000443070 2175 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
MRE11P49959 MCF2L-213ENST00000421756 3560 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 61.6 ms