Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 C21orf62-203ENST00000487113 1009 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL6A3P12111 AC008446.1-201ENST00000522454 451 ntBASIC13.66□□□□□ -0.22
COL6A3P12111 ACP2-209ENST00000530453 826 ntTSL 2 BASIC13.66□□□□□ -0.22
COL6A3P12111 KRTAP4-9-202ENST00000617453 558 ntTSL 5 BASIC13.66□□□□□ -0.22
COL6A3P12111 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL6A3P12111 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC13.66□□□□□ -0.22
COL6A3P12111 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC13.66□□□□□ -0.22
COL6A3P12111 ADGRG3-201ENST00000333493 2728 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL6A3P12111 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL6A3P12111 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL6A3P12111 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC13.66□□□□□ -0.22
COL6A3P12111 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
COL6A3P12111 RNF113A-201ENST00000371442 1353 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
COL6A3P12111 PGM1-202ENST00000371084 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL6A3P12111 OR4C5-201ENST00000319813 981 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
COL6A3P12111 SH3BGR-204ENST00000380637 1014 ntTSL 3 BASIC13.66□□□□□ -0.22
COL6A3P12111 AL031663.2-201ENST00000417630 355 ntTSL 2 BASIC13.66□□□□□ -0.22
COL6A3P12111 PHBP11-201ENST00000420550 809 ntBASIC13.66□□□□□ -0.22
COL6A3P12111 AC007279.1-201ENST00000448547 837 ntBASIC13.66□□□□□ -0.22
COL6A3P12111 MIOXP1-201ENST00000521205 835 ntBASIC13.66□□□□□ -0.22
COL6A3P12111 CLCF1-202ENST00000533438 967 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
COL6A3P12111 CLEC4M-210ENST00000597522 811 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL6A3P12111 GMNN-207ENST00000620958 1039 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
COL6A3P12111 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC13.66□□□□□ -0.22
COL6A3P12111 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL6A3P12111 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
COL6A3P12111 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL6A3P12111 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC13.66□□□□□ -0.22
COL6A3P12111 TPD52L3-203ENST00000381428 1321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL6A3P12111 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL6A3P12111 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL6A3P12111 FSTL1-202ENST00000424703 1396 ntTSL 2 BASIC13.65□□□□□ -0.22
COL6A3P12111 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
COL6A3P12111 GOSR2-233ENST00000640068 3103 ntTSL 5 BASIC13.65□□□□□ -0.22
COL6A3P12111 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC13.65□□□□□ -0.22
COL6A3P12111 KRTAP20-2-201ENST00000330798 384 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
COL6A3P12111 CAMK2B-202ENST00000346990 1448 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
COL6A3P12111 PPP1R2P9-201ENST00000378131 880 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
COL6A3P12111 ZEB2P1-201ENST00000515048 1141 ntBASIC13.65□□□□□ -0.22
COL6A3P12111 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
COL6A3P12111 OR13C2-201ENST00000542196 957 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
COL6A3P12111 SLIRP-209ENST00000557342 408 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
COL6A3P12111 SLIRP-211ENST00000557623 865 ntTSL 2 BASIC13.65□□□□□ -0.22
COL6A3P12111 LINC02166-201ENST00000567544 721 ntTSL 3 BASIC13.65□□□□□ -0.22
COL6A3P12111 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL6A3P12111 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL6A3P12111 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC13.65□□□□□ -0.22
COL6A3P12111 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
COL6A3P12111 PAEP-201ENST00000277508 821 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL6A3P12111 RPL10A-201ENST00000322203 716 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL6A3P12111 TBC1D3P3-201ENST00000342824 1080 ntBASIC13.65□□□□□ -0.22
COL6A3P12111 INSL6-201ENST00000381641 758 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL6A3P12111 PPP1R2P1-209ENST00000420261 678 ntBASIC13.65□□□□□ -0.22
COL6A3P12111 AL589843.2-201ENST00000445872 1262 ntBASIC13.65□□□□□ -0.22
COL6A3P12111 RAET1G-203ENST00000479265 1078 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
COL6A3P12111 RN7SL748P-201ENST00000483066 311 ntBASIC13.65□□□□□ -0.22
COL6A3P12111 SLC16A14P1-201ENST00000506846 1117 ntBASIC13.65□□□□□ -0.22
COL6A3P12111 RBPMS-205ENST00000517860 1076 ntTSL 2 BASIC13.65□□□□□ -0.22
COL6A3P12111 AP000553.2-201ENST00000609038 441 ntBASIC13.65□□□□□ -0.22
COL6A3P12111 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
COL6A3P12111 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC13.65□□□□□ -0.22
COL6A3P12111 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
COL6A3P12111 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
COL6A3P12111 CREB5-203ENST00000396299 2294 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
COL6A3P12111 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC13.65□□□□□ -0.22
COL6A3P12111 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL6A3P12111 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
COL6A3P12111 BNIP1-203ENST00000352523 1143 ntTSL 1 (best) BASIC13.65□□□□□ -0.23
COL6A3P12111 RNA5SP469-201ENST00000364165 109 ntBASIC13.65□□□□□ -0.23
COL6A3P12111 TTC32-202ENST00000402414 735 ntTSL 5 BASIC13.65□□□□□ -0.23
COL6A3P12111 AC011995.1-201ENST00000437610 578 ntTSL 1 (best) BASIC13.65□□□□□ -0.23
COL6A3P12111 UBTFL1-201ENST00000530464 1182 ntAPPRIS P1 BASIC13.65□□□□□ -0.23
COL6A3P12111 MIR4761-201ENST00000585066 82 ntBASIC13.65□□□□□ -0.23
COL6A3P12111 TTN-AS1-231ENST00000589434 1066 ntTSL 5 BASIC13.65□□□□□ -0.23
COL6A3P12111 PDZRN3-AS1-202ENST00000608304 774 ntTSL 5 BASIC13.65□□□□□ -0.23
COL6A3P12111 TTN-AS1-270ENST00000630096 915 ntTSL 5 BASIC13.65□□□□□ -0.23
COL6A3P12111 TNNT3-217ENST00000641225 877 ntBASIC13.65□□□□□ -0.23
COL6A3P12111 AC020928.1-201ENST00000590750 1850 ntTSL 2 BASIC13.65□□□□□ -0.23
COL6A3P12111 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.23
COL6A3P12111 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC13.64□□□□□ -0.23
COL6A3P12111 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A3P12111 AS3MT-202ENST00000615257 1723 ntTSL 5 BASIC13.64□□□□□ -0.23
COL6A3P12111 FHL1-229ENST00000629039 1501 ntTSL 2 BASIC13.64□□□□□ -0.23
COL6A3P12111 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A3P12111 IP6K2-219ENST00000446860 1565 ntTSL 2 BASIC13.64□□□□□ -0.23
COL6A3P12111 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A3P12111 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A3P12111 UBBP4-202ENST00000584755 1459 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A3P12111 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A3P12111 AC008434.1-201ENST00000514201 549 ntTSL 3 BASIC13.64□□□□□ -0.23
COL6A3P12111 TPD52L1-206ENST00000524679 915 ntTSL 2 BASIC13.64□□□□□ -0.23
COL6A3P12111 AC110058.1-201ENST00000530389 563 ntTSL 4 BASIC13.64□□□□□ -0.23
COL6A3P12111 SNHG14-220ENST00000553149 513 ntTSL 5 BASIC13.64□□□□□ -0.23
COL6A3P12111 AC005828.4-201ENST00000584608 552 ntTSL 4 BASIC13.64□□□□□ -0.23
COL6A3P12111 PDE4C-213ENST00000598111 1284 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A3P12111 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC13.64□□□□□ -0.23
COL6A3P12111 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC13.64□□□□□ -0.23
COL6A3P12111 LINC00222-207ENST00000448744 1751 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A3P12111 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A3P12111 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 70.5 ms