Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
HMGB1P09429 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC16.3■□□□□ 0.2
HMGB1P09429 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC16.3■□□□□ 0.2
HMGB1P09429 ESRRAP2-203ENST00000453309 822 ntTSL 5 BASIC16.3■□□□□ 0.2
HMGB1P09429 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC16.3■□□□□ 0.2
HMGB1P09429 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC16.3■□□□□ 0.2
HMGB1P09429 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC16.3■□□□□ 0.2
HMGB1P09429 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC16.3■□□□□ 0.2
HMGB1P09429 ZNF571-AS1-204ENST00000587121 822 ntTSL 3 BASIC16.3■□□□□ 0.2
HMGB1P09429 ATF7-212ENST00000591397 860 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HMGB1P09429 AC091769.1-201ENST00000619576 568 ntBASIC16.3■□□□□ 0.2
HMGB1P09429 SLC22A20-202ENST00000525437 3196 ntTSL 5 BASIC16.3■□□□□ 0.2
HMGB1P09429 OS9-203ENST00000389142 2457 ntTSL 5 BASIC16.3■□□□□ 0.2
HMGB1P09429 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGB1P09429 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGB1P09429 CDIP1-201ENST00000399599 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGB1P09429 MYO1C-218ENST00000575158 4804 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
HMGB1P09429 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGB1P09429 AC139795.2-201ENST00000499900 1751 ntTSL 2 BASIC16.3■□□□□ 0.2
HMGB1P09429 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
HMGB1P09429 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC16.3■□□□□ 0.2
HMGB1P09429 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGB1P09429 AC012349.1-201ENST00000518662 2643 ntTSL 2 BASIC16.3■□□□□ 0.2
HMGB1P09429 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB1P09429 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB1P09429 ADAMTSL2-203ENST00000393061 4270 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB1P09429 AC015712.2-202ENST00000560068 3213 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB1P09429 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB1P09429 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC16.29■□□□□ 0.2
HMGB1P09429 ZCCHC12-201ENST00000310164 2231 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB1P09429 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB1P09429 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB1P09429 ATG9B-203ENST00000469530 3489 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
HMGB1P09429 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC16.29■□□□□ 0.2
HMGB1P09429 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC16.29■□□□□ 0.2
HMGB1P09429 ERP29P1-201ENST00000442902 706 ntBASIC16.29■□□□□ 0.2
HMGB1P09429 AC005077.3-201ENST00000449614 213 ntBASIC16.29■□□□□ 0.2
HMGB1P09429 OAZ3-203ENST00000453029 729 ntTSL 5 BASIC16.29■□□□□ 0.2
HMGB1P09429 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB1P09429 RMDN1-218ENST00000523911 950 ntTSL 2 BASIC16.29■□□□□ 0.2
HMGB1P09429 EHF-208ENST00000530286 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB1P09429 SNORD3B-1-201ENST00000577988 758 ntBASIC16.29■□□□□ 0.2
HMGB1P09429 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC16.29■□□□□ 0.2
HMGB1P09429 DDX50-201ENST00000373585 2538 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB1P09429 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC16.29■□□□□ 0.2
HMGB1P09429 HNRNPLL-209ENST00000449105 4173 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB1P09429 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
HMGB1P09429 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB1P09429 MTMR3-204ENST00000401950 6018 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB1P09429 SDR16C5-202ENST00000396721 2399 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB1P09429 HECTD1-203ENST00000553700 9080 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
HMGB1P09429 TMEM130-201ENST00000339375 3015 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB1P09429 TRIM4-201ENST00000349062 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB1P09429 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB1P09429 IL1RAPL2-202ENST00000372582 2985 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB1P09429 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB1P09429 VAPB-202ENST00000395802 1834 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB1P09429 ANKRD30B-202ENST00000358984 4359 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB1P09429 RGS3-205ENST00000374134 2862 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB1P09429 MIER1-202ENST00000355977 3595 ntTSL 5 BASIC16.28■□□□□ 0.2
HMGB1P09429 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB1P09429 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB1P09429 OTUD4-201ENST00000447906 3829 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
HMGB1P09429 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB1P09429 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC16.28■□□□□ 0.2
HMGB1P09429 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB1P09429 UBE2A-206ENST00000625938 1381 ntTSL 2 BASIC16.28■□□□□ 0.2
HMGB1P09429 DLX4-206ENST00000611342 1662 ntBASIC16.28■□□□□ 0.2
HMGB1P09429 PRKAR2A-202ENST00000296446 3318 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB1P09429 AC114689.3-201ENST00000583687 2991 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB1P09429 FGGY-201ENST00000303721 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB1P09429 AC125807.2-201ENST00000513358 3514 ntBASIC16.28■□□□□ 0.2
HMGB1P09429 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
HMGB1P09429 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB1P09429 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB1P09429 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB1P09429 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC16.28■□□□□ 0.2
HMGB1P09429 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC16.28■□□□□ 0.2
HMGB1P09429 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC16.28■□□□□ 0.2
HMGB1P09429 NDUFS6P1-201ENST00000485187 316 ntBASIC16.28■□□□□ 0.2
HMGB1P09429 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC16.28■□□□□ 0.2
HMGB1P09429 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC16.28■□□□□ 0.2
HMGB1P09429 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB1P09429 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC16.28■□□□□ 0.2
HMGB1P09429 MIR2392-201ENST00000584881 84 ntBASIC16.28■□□□□ 0.2
HMGB1P09429 AL359091.4-201ENST00000610052 409 ntBASIC16.28■□□□□ 0.2
HMGB1P09429 AC007718.1-201ENST00000621078 280 ntBASIC16.28■□□□□ 0.2
HMGB1P09429 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC16.28■□□□□ 0.2
HMGB1P09429 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB1P09429 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
HMGB1P09429 WHRN-201ENST00000265134 2847 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB1P09429 NRP1-202ENST00000374816 2804 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB1P09429 FIBCD1-204ENST00000448616 3119 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
HMGB1P09429 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB1P09429 AP3M2-207ENST00000518421 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB1P09429 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB1P09429 PINX1-201ENST00000314787 1545 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB1P09429 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB1P09429 AC005562.1-201ENST00000583030 3219 ntBASIC16.28■□□□□ 0.2
HMGB1P09429 GLIPR1L2-201ENST00000320460 1729 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 65.1 ms