Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DOAP06340 AL355482.2-201ENST00000428646 1145 ntTSL 2 BASIC16.16■□□□□ 0.18
HLA-DOAP06340 GOLGA6L16P-201ENST00000441780 1299 ntBASIC16.16■□□□□ 0.18
HLA-DOAP06340 AL512622.1-202ENST00000443922 478 ntTSL 3 BASIC16.16■□□□□ 0.18
HLA-DOAP06340 AC019118.1-201ENST00000454530 435 ntTSL 3 BASIC16.16■□□□□ 0.18
HLA-DOAP06340 SMUG1-221ENST00000514196 553 ntTSL 4 BASIC16.16■□□□□ 0.18
HLA-DOAP06340 AL161668.2-201ENST00000531638 492 ntTSL 5 BASIC16.16■□□□□ 0.18
HLA-DOAP06340 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC16.16■□□□□ 0.18
HLA-DOAP06340 SRP14-204ENST00000558720 780 ntTSL 2 BASIC16.16■□□□□ 0.18
HLA-DOAP06340 ABHD17AP9-201ENST00000561925 548 ntBASIC16.16■□□□□ 0.18
HLA-DOAP06340 LINC00511-205ENST00000578206 908 ntTSL 3 BASIC16.16■□□□□ 0.18
HLA-DOAP06340 RN7SL596P-201ENST00000582123 288 ntBASIC16.16■□□□□ 0.18
HLA-DOAP06340 Metazoa_SRP.141-201ENST00000615072 282 ntBASIC16.16■□□□□ 0.18
HLA-DOAP06340 TMEM182-201ENST00000409173 3198 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DOAP06340 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC16.16■□□□□ 0.18
HLA-DOAP06340 WASHC2A-209ENST00000611324 4417 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
HLA-DOAP06340 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DOAP06340 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC16.16■□□□□ 0.18
HLA-DOAP06340 PEG13-201ENST00000631594 5667 ntBASIC16.16■□□□□ 0.18
HLA-DOAP06340 ABCA17P-202ENST00000469908 4188 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DOAP06340 ERG-211ENST00000453032 1595 ntTSL 2 BASIC16.16■□□□□ 0.18
HLA-DOAP06340 DDX46-212ENST00000628477 1584 ntTSL 5 BASIC16.16■□□□□ 0.18
HLA-DOAP06340 ZNF263-202ENST00000538765 1721 ntTSL 2 BASIC16.16■□□□□ 0.18
HLA-DOAP06340 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC16.16■□□□□ 0.18
HLA-DOAP06340 CIITA-213ENST00000618327 4657 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
HLA-DOAP06340 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DOAP06340 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
HLA-DOAP06340 AC111170.3-201ENST00000624282 2464 ntBASIC16.16■□□□□ 0.18
HLA-DOAP06340 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DOAP06340 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DOAP06340 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
HLA-DOAP06340 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC16.15■□□□□ 0.18
HLA-DOAP06340 RAB15-201ENST00000267512 3391 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DOAP06340 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
HLA-DOAP06340 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC16.15■□□□□ 0.18
HLA-DOAP06340 PINX1-201ENST00000314787 1545 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DOAP06340 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DOAP06340 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DOAP06340 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
HLA-DOAP06340 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DOAP06340 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC16.15■□□□□ 0.18
HLA-DOAP06340 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC16.15■□□□□ 0.18
HLA-DOAP06340 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
HLA-DOAP06340 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
HLA-DOAP06340 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DOAP06340 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DOAP06340 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DOAP06340 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DOAP06340 OLFML2B-202ENST00000367938 1153 ntTSL 2 BASIC16.15■□□□□ 0.18
HLA-DOAP06340 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
HLA-DOAP06340 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC16.15■□□□□ 0.18
HLA-DOAP06340 AC093609.1-201ENST00000434020 952 ntTSL 2 BASIC16.15■□□□□ 0.18
HLA-DOAP06340 CITED1-209ENST00000453707 998 ntAPPRIS ALT2 TSL 3 BASIC16.15■□□□□ 0.18
HLA-DOAP06340 VDAC1P11-201ENST00000458323 852 ntBASIC16.15■□□□□ 0.18
HLA-DOAP06340 RPL29P2-202ENST00000498671 657 ntBASIC16.15■□□□□ 0.18
HLA-DOAP06340 AC062028.1-201ENST00000536743 1422 ntTSL 5 BASIC16.15■□□□□ 0.18
HLA-DOAP06340 KNOP1P1-201ENST00000542108 989 ntBASIC16.15■□□□□ 0.18
HLA-DOAP06340 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC16.15■□□□□ 0.18
HLA-DOAP06340 METTL7AP1-201ENST00000547343 496 ntBASIC16.15■□□□□ 0.18
HLA-DOAP06340 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC16.15■□□□□ 0.18
HLA-DOAP06340 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC16.15■□□□□ 0.18
HLA-DOAP06340 ZNF737-204ENST00000596797 569 ntTSL 4 BASIC16.15■□□□□ 0.18
HLA-DOAP06340 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DOAP06340 DMBT1P1-203ENST00000636837 4628 ntBASIC16.15■□□□□ 0.18
HLA-DOAP06340 PTPRH-202ENST00000376350 3877 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DOAP06340 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DOAP06340 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DOAP06340 DANT2-201ENST00000430756 2079 ntTSL 3 BASIC16.15■□□□□ 0.18
HLA-DOAP06340 LINC00637-201ENST00000556586 2056 ntTSL 2 BASIC16.15■□□□□ 0.18
HLA-DOAP06340 STAMBP-204ENST00000409707 1649 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
HLA-DOAP06340 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DOAP06340 KRT8P25-201ENST00000473150 1456 ntBASIC16.15■□□□□ 0.18
HLA-DOAP06340 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DOAP06340 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DOAP06340 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC16.15■□□□□ 0.18
HLA-DOAP06340 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC16.15■□□□□ 0.18
HLA-DOAP06340 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
HLA-DOAP06340 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC16.15■□□□□ 0.18
HLA-DOAP06340 EDC3-201ENST00000315127 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
HLA-DOAP06340 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DOAP06340 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DOAP06340 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DOAP06340 AC117489.1-201ENST00000625169 3217 ntBASIC16.14■□□□□ 0.17
HLA-DOAP06340 CSF3-204ENST00000394149 1583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DOAP06340 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DOAP06340 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
HLA-DOAP06340 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DOAP06340 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DOAP06340 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DOAP06340 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
HLA-DOAP06340 CYB5R2-201ENST00000299498 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DOAP06340 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DOAP06340 IFITM1-201ENST00000328221 844 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
HLA-DOAP06340 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DOAP06340 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DOAP06340 SPATA21-202ENST00000375577 1136 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DOAP06340 IFITM1-202ENST00000408968 855 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DOAP06340 OR7E155P-201ENST00000412208 1014 ntBASIC16.14■□□□□ 0.17
HLA-DOAP06340 AL929302.1-201ENST00000426556 871 ntBASIC16.14■□□□□ 0.17
HLA-DOAP06340 AC015818.1-201ENST00000451011 244 ntBASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms