Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 AC139795.2-201ENST00000499900 1751 ntTSL 2 BASIC11.22□□□□□ -0.61
LMO4P61968 SMAD1-AS1-201ENST00000513542 481 ntTSL 2 BASIC11.22□□□□□ -0.61
LMO4P61968 IGHEP2-201ENST00000519308 1256 ntBASIC11.22□□□□□ -0.61
LMO4P61968 EXTL3-AS1-203ENST00000520023 780 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
LMO4P61968 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
LMO4P61968 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
LMO4P61968 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
LMO4P61968 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC11.22□□□□□ -0.61
LMO4P61968 LINC01996-201ENST00000573270 1273 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
LMO4P61968 ABR-228ENST00000574437 3196 ntTSL 5 BASIC11.22□□□□□ -0.61
LMO4P61968 AC010531.8-201ENST00000623341 685 ntBASIC11.22□□□□□ -0.61
LMO4P61968 GSTT2-203ENST00000634759 1184 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
LMO4P61968 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC11.22□□□□□ -0.61
LMO4P61968 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC11.22□□□□□ -0.61
LMO4P61968 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
LMO4P61968 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
LMO4P61968 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
LMO4P61968 AC026748.1-201ENST00000624349 3251 ntBASIC11.22□□□□□ -0.61
LMO4P61968 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
LMO4P61968 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
LMO4P61968 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
LMO4P61968 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
LMO4P61968 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC11.22□□□□□ -0.61
LMO4P61968 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
LMO4P61968 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
LMO4P61968 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
LMO4P61968 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC11.22□□□□□ -0.61
LMO4P61968 ALDH7A1-201ENST00000409134 4964 ntAPPRIS P2 TSL 1 (best) BASIC11.21□□□□□ -0.61
LMO4P61968 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
LMO4P61968 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC11.21□□□□□ -0.61
LMO4P61968 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
LMO4P61968 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
LMO4P61968 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
LMO4P61968 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
LMO4P61968 UCKL1-AS1-201ENST00000623569 3602 ntBASIC11.21□□□□□ -0.61
LMO4P61968 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC11.21□□□□□ -0.61
LMO4P61968 MARK2P9-201ENST00000430958 1727 ntBASIC11.21□□□□□ -0.61
LMO4P61968 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
LMO4P61968 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC11.21□□□□□ -0.61
LMO4P61968 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
LMO4P61968 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
LMO4P61968 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC11.21□□□□□ -0.61
LMO4P61968 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC11.21□□□□□ -0.61
LMO4P61968 LINC00967-203ENST00000518035 1502 ntTSL 2 BASIC11.21□□□□□ -0.61
LMO4P61968 LINC00675-202ENST00000581851 1530 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
LMO4P61968 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC11.21□□□□□ -0.61
LMO4P61968 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC11.21□□□□□ -0.61
LMO4P61968 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC11.21□□□□□ -0.61
LMO4P61968 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC11.21□□□□□ -0.61
LMO4P61968 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
LMO4P61968 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC11.21□□□□□ -0.61
LMO4P61968 FSTL4-207ENST00000621681 2660 ntTSL 5 BASIC11.21□□□□□ -0.61
LMO4P61968 TNNI2-202ENST00000381905 706 ntAPPRIS ALT1 TSL 3 BASIC11.21□□□□□ -0.61
LMO4P61968 TNNI2-203ENST00000381906 745 ntAPPRIS P3 TSL 3 BASIC11.21□□□□□ -0.61
LMO4P61968 TNNI2-204ENST00000381911 743 ntAPPRIS P3 TSL 2 BASIC11.21□□□□□ -0.61
LMO4P61968 TMEM95-202ENST00000389982 1191 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
LMO4P61968 AL158207.2-201ENST00000414926 266 ntTSL 5 BASIC11.21□□□□□ -0.61
LMO4P61968 AL021391.1-201ENST00000454439 545 ntTSL 4 BASIC11.21□□□□□ -0.61
LMO4P61968 TMEM14B-215ENST00000481240 1032 ntTSL 2 BASIC11.21□□□□□ -0.61
LMO4P61968 AC008443.1-202ENST00000506340 687 ntTSL 2 BASIC11.21□□□□□ -0.61
LMO4P61968 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC11.21□□□□□ -0.61
LMO4P61968 PHBP18-201ENST00000546648 813 ntBASIC11.21□□□□□ -0.61
LMO4P61968 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC11.21□□□□□ -0.61
LMO4P61968 AC139099.2-201ENST00000572343 641 ntTSL 3 BASIC11.21□□□□□ -0.61
LMO4P61968 AC087741.1-204ENST00000573935 646 ntTSL 3 BASIC11.21□□□□□ -0.61
LMO4P61968 AIPL1-210ENST00000576307 1077 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
LMO4P61968 KRT8P34-201ENST00000577607 1044 ntBASIC11.21□□□□□ -0.61
LMO4P61968 MIR4746-201ENST00000579802 71 ntBASIC11.21□□□□□ -0.61
LMO4P61968 AC007998.2-201ENST00000589258 455 ntAPPRIS P1 TSL 3 BASIC11.21□□□□□ -0.61
LMO4P61968 AL078590.3-205ENST00000606039 465 ntTSL 5 BASIC11.21□□□□□ -0.61
LMO4P61968 MIAT_exon5_3.1-201ENST00000613656 377 ntBASIC11.21□□□□□ -0.61
LMO4P61968 AQP7-213ENST00000624075 1270 ntTSL 2 BASIC11.21□□□□□ -0.61
LMO4P61968 PAX6-237ENST00000638696 1203 ntTSL 5 BASIC11.21□□□□□ -0.61
LMO4P61968 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.61
LMO4P61968 GPATCH2L-202ENST00000312858 2438 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.61
LMO4P61968 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
LMO4P61968 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
LMO4P61968 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
LMO4P61968 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
LMO4P61968 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
LMO4P61968 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.62
LMO4P61968 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
LMO4P61968 TCP11L1-209ENST00000531632 1898 ntAPPRIS P1 TSL 2 BASIC11.21□□□□□ -0.62
LMO4P61968 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC11.21□□□□□ -0.62
LMO4P61968 ATP1B3-201ENST00000286371 1811 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
LMO4P61968 MAP7-205ENST00000544465 2744 ntAPPRIS ALT2 TSL 2 BASIC11.21□□□□□ -0.62
LMO4P61968 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC11.21□□□□□ -0.62
LMO4P61968 NR1H4-203ENST00000392986 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC11.21□□□□□ -0.62
LMO4P61968 KCTD6-205ENST00000490264 1759 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.62
LMO4P61968 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC11.21□□□□□ -0.62
LMO4P61968 LINC00638-201ENST00000555578 2518 ntBASIC11.2□□□□□ -0.62
LMO4P61968 CNGB1-202ENST00000311183 1633 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
LMO4P61968 AL928921.2-201ENST00000641325 2442 ntBASIC11.2□□□□□ -0.62
LMO4P61968 PTN-202ENST00000393083 1599 ntTSL 5 BASIC11.2□□□□□ -0.62
LMO4P61968 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
LMO4P61968 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
LMO4P61968 MANEA-AS1-201ENST00000564541 2268 ntBASIC11.2□□□□□ -0.62
LMO4P61968 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
LMO4P61968 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC11.2□□□□□ -0.62
LMO4P61968 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC11.2□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms