Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ACIN1-202ENST00000338631 2445 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA1P55317 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
FOXA1P55317 GHITM-201ENST00000372134 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA1P55317 C8B-201ENST00000371237 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA1P55317 HSPA8P9-201ENST00000485881 1943 ntBASIC13.39□□□□□ -0.27
FOXA1P55317 USP3-204ENST00000540797 5474 ntTSL 2 BASIC13.39□□□□□ -0.27
FOXA1P55317 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA1P55317 CTBP1-AS-201ENST00000625256 3886 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA1P55317 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA1P55317 CARS-AS1-201ENST00000499962 2664 ntTSL 2 BASIC13.38□□□□□ -0.27
FOXA1P55317 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA1P55317 FHOD3-206ENST00000590592 4869 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA1P55317 RGS22-201ENST00000360863 4296 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA1P55317 NOP2-212ENST00000541778 3038 ntTSL 2 BASIC13.38□□□□□ -0.27
FOXA1P55317 AL355336.1-201ENST00000451355 1676 ntTSL 2 BASIC13.38□□□□□ -0.27
FOXA1P55317 GAPDHS-201ENST00000222286 1489 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA1P55317 IKBKB-218ENST00000520835 2403 ntTSL 2 BASIC13.38□□□□□ -0.27
FOXA1P55317 CRISP2-201ENST00000339139 1382 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA1P55317 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA1P55317 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA1P55317 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC13.38□□□□□ -0.27
FOXA1P55317 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA1P55317 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA1P55317 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
FOXA1P55317 SLC16A6P1-201ENST00000413214 1059 ntBASIC13.38□□□□□ -0.27
FOXA1P55317 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC13.38□□□□□ -0.27
FOXA1P55317 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC13.38□□□□□ -0.27
FOXA1P55317 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC13.38□□□□□ -0.27
FOXA1P55317 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC13.38□□□□□ -0.27
FOXA1P55317 KLF17P1-201ENST00000547105 1126 ntBASIC13.38□□□□□ -0.27
FOXA1P55317 AL136295.3-201ENST00000558325 850 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
FOXA1P55317 AC087741.1-205ENST00000572730 750 ntTSL 3 BASIC13.38□□□□□ -0.27
FOXA1P55317 LAMTOR5-AS1-209ENST00000597455 805 ntBASIC13.38□□□□□ -0.27
FOXA1P55317 AL133467.4-201ENST00000602953 725 ntBASIC13.38□□□□□ -0.27
FOXA1P55317 AC026740.1-201ENST00000607068 791 ntBASIC13.38□□□□□ -0.27
FOXA1P55317 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC13.38□□□□□ -0.27
FOXA1P55317 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC13.38□□□□□ -0.27
FOXA1P55317 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
FOXA1P55317 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA1P55317 TWSG1-201ENST00000262120 3756 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA1P55317 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA1P55317 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA1P55317 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA1P55317 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA1P55317 DPP8-204ENST00000358939 2822 ntTSL 2 BASIC13.38□□□□□ -0.27
FOXA1P55317 CIITA-213ENST00000618327 4657 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
FOXA1P55317 LAIR1-204ENST00000391743 2735 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
FOXA1P55317 SERPINB1-201ENST00000380739 2619 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA1P55317 LEPROTL1-201ENST00000321250 3173 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA1P55317 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA1P55317 TRO-225ENST00000622017 1403 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
FOXA1P55317 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA1P55317 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
FOXA1P55317 EFR3B-205ENST00000405108 2432 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA1P55317 SMG6-203ENST00000536871 1865 ntTSL 2 BASIC13.38□□□□□ -0.27
FOXA1P55317 DMBX1-201ENST00000360032 2880 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA1P55317 AGPAT1-203ENST00000375107 2234 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA1P55317 PHF10-206ENST00000621772 1651 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA1P55317 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA1P55317 DTX1-201ENST00000257600 3455 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA1P55317 FAM187A-201ENST00000331733 3397 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA1P55317 CCDC103-204ENST00000417826 3397 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA1P55317 NAA60-214ENST00000572584 2450 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA1P55317 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA1P55317 AC027369.3-201ENST00000530465 3707 ntBASIC13.37□□□□□ -0.27
FOXA1P55317 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA1P55317 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA1P55317 LINC00969-231ENST00000597482 1476 ntTSL 5 BASIC13.37□□□□□ -0.27
FOXA1P55317 COG1-201ENST00000299886 3079 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA1P55317 ITFG1-204ENST00000544001 1849 ntTSL 2 BASIC13.37□□□□□ -0.27
FOXA1P55317 NCDN-201ENST00000356090 3433 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA1P55317 TNRC6B-203ENST00000402203 3444 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA1P55317 POLR1C-203ENST00000372389 1355 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA1P55317 PES1P2-201ENST00000449745 1735 ntBASIC13.37□□□□□ -0.27
FOXA1P55317 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA1P55317 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA1P55317 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
FOXA1P55317 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC13.37□□□□□ -0.27
FOXA1P55317 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA1P55317 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC13.37□□□□□ -0.27
FOXA1P55317 HNRNPA1P32-201ENST00000396326 963 ntBASIC13.37□□□□□ -0.27
FOXA1P55317 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA1P55317 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC13.37□□□□□ -0.27
FOXA1P55317 DNAJB1P1-201ENST00000429417 1024 ntBASIC13.37□□□□□ -0.27
FOXA1P55317 ATP5G2P4-201ENST00000442175 420 ntBASIC13.37□□□□□ -0.27
FOXA1P55317 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC13.37□□□□□ -0.27
FOXA1P55317 AC011995.2-201ENST00000452701 574 ntTSL 4 BASIC13.37□□□□□ -0.27
FOXA1P55317 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC13.37□□□□□ -0.27
FOXA1P55317 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA1P55317 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA1P55317 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC13.37□□□□□ -0.27
FOXA1P55317 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC13.37□□□□□ -0.27
FOXA1P55317 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC13.37□□□□□ -0.27
FOXA1P55317 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC13.37□□□□□ -0.27
FOXA1P55317 HPN-206ENST00000597419 1212 ntTSL 5 BASIC13.37□□□□□ -0.27
FOXA1P55317 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC13.37□□□□□ -0.27
FOXA1P55317 ZNF124-202ENST00000472531 2243 ntTSL 2 BASIC13.37□□□□□ -0.27
FOXA1P55317 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
FOXA1P55317 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
FOXA1P55317 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms