Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIG3P49916 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC14.69□□□□□ -0.06
LIG3P49916 NHLH2-202ENST00000369506 7226 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
LIG3P49916 ESYT3-202ENST00000389567 4407 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIG3P49916 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
LIG3P49916 FAM212B-AS1-201ENST00000430373 2131 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
LIG3P49916 AC015688.4-201ENST00000580780 1647 ntBASIC14.69□□□□□ -0.06
LIG3P49916 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIG3P49916 RBL1-202ENST00000373664 5684 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIG3P49916 SARDH-204ENST00000371872 3344 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIG3P49916 TACC2-209ENST00000369004 3667 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
LIG3P49916 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIG3P49916 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIG3P49916 KIAA1217-209ENST00000430453 5962 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
LIG3P49916 KIAA1217-211ENST00000458595 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIG3P49916 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIG3P49916 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
LIG3P49916 AC134772.2-202ENST00000634384 3585 ntTSL 2 BASIC14.68□□□□□ -0.06
LIG3P49916 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIG3P49916 SEC31A-208ENST00000448323 4255 ntAPPRIS P4 TSL 5 BASIC14.68□□□□□ -0.06
LIG3P49916 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LIG3P49916 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIG3P49916 SPATA2-202ENST00000422556 4138 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
LIG3P49916 Z98257.2-202ENST00000641138 1548 ntBASIC14.68□□□□□ -0.06
LIG3P49916 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
LIG3P49916 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LIG3P49916 NPPA-201ENST00000376476 728 ntTSL 3 BASIC14.68□□□□□ -0.06
LIG3P49916 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIG3P49916 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIG3P49916 AC016700.1-201ENST00000429424 312 ntBASIC14.68□□□□□ -0.06
LIG3P49916 CALR4P-201ENST00000431943 946 ntBASIC14.68□□□□□ -0.06
LIG3P49916 AL645933.1-201ENST00000440087 609 ntBASIC14.68□□□□□ -0.06
LIG3P49916 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC14.68□□□□□ -0.06
LIG3P49916 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC14.68□□□□□ -0.06
LIG3P49916 AC103988.2-201ENST00000561804 725 ntBASIC14.68□□□□□ -0.06
LIG3P49916 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC14.68□□□□□ -0.06
LIG3P49916 AC090164.2-201ENST00000611487 516 ntBASIC14.68□□□□□ -0.06
LIG3P49916 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LIG3P49916 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LIG3P49916 SNED1-205ENST00000405547 7986 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
LIG3P49916 TRIM40-207ENST00000396581 2086 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIG3P49916 GPRC5A-201ENST00000014914 7362 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIG3P49916 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIG3P49916 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
LIG3P49916 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIG3P49916 LIMK1-208ENST00000538333 2170 ntTSL 2 BASIC14.68□□□□□ -0.06
LIG3P49916 MARCH10-201ENST00000311269 3090 ntAPPRIS P3 TSL 2 BASIC14.68□□□□□ -0.06
LIG3P49916 SPINT1-201ENST00000344051 3056 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIG3P49916 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIG3P49916 MUC20-203ENST00000436408 2463 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
LIG3P49916 KIZ-213ENST00000620891 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIG3P49916 AGAP2-203ENST00000547588 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIG3P49916 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIG3P49916 SLC11A1-201ENST00000233202 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIG3P49916 SLC13A4-201ENST00000354042 2897 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIG3P49916 SLC9A8-201ENST00000361573 6094 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIG3P49916 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LIG3P49916 IFT172-203ENST00000416524 1982 ntTSL 2 BASIC14.67□□□□□ -0.06
LIG3P49916 C2-209ENST00000452323 1999 ntTSL 2 BASIC14.67□□□□□ -0.06
LIG3P49916 ZDHHC11-201ENST00000283441 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIG3P49916 CDK5RAP1-203ENST00000357886 2164 ntTSL 5 BASIC14.67□□□□□ -0.06
LIG3P49916 AC144450.1-201ENST00000366424 1641 ntTSL 2 BASIC14.67□□□□□ -0.06
LIG3P49916 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIG3P49916 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIG3P49916 SH2D7-201ENST00000328828 2750 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
LIG3P49916 CASS4-202ENST00000434344 2888 ntTSL 2 BASIC14.67□□□□□ -0.06
LIG3P49916 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC14.67□□□□□ -0.06
LIG3P49916 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC14.67□□□□□ -0.06
LIG3P49916 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIG3P49916 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LIG3P49916 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC14.67□□□□□ -0.06
LIG3P49916 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC14.67□□□□□ -0.06
LIG3P49916 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
LIG3P49916 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LIG3P49916 HIST2H2BC-201ENST00000498492 580 ntBASIC14.67□□□□□ -0.06
LIG3P49916 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC14.67□□□□□ -0.06
LIG3P49916 AL160314.3-201ENST00000556041 767 ntBASIC14.67□□□□□ -0.06
LIG3P49916 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC14.67□□□□□ -0.06
LIG3P49916 CSH2-206ENST00000560142 749 ntTSL 5 BASIC14.67□□□□□ -0.06
LIG3P49916 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC14.67□□□□□ -0.06
LIG3P49916 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC14.67□□□□□ -0.06
LIG3P49916 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LIG3P49916 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC14.67□□□□□ -0.06
LIG3P49916 AL136295.7-201ENST00000619226 1200 ntBASIC14.67□□□□□ -0.06
LIG3P49916 AL139099.5-201ENST00000635274 300 ntBASIC14.67□□□□□ -0.06
LIG3P49916 KRT8P28-201ENST00000433288 1390 ntBASIC14.67□□□□□ -0.06
LIG3P49916 TMOD1-202ENST00000375175 2516 ntTSL 2 BASIC14.67□□□□□ -0.06
LIG3P49916 USP19-206ENST00000417901 4706 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIG3P49916 MAGED1-201ENST00000326587 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIG3P49916 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LIG3P49916 KCNJ14-202ENST00000391884 3990 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIG3P49916 DDX12P-201ENST00000432996 2947 ntBASIC14.67□□□□□ -0.06
LIG3P49916 FBN3-207ENST00000601739 9086 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIG3P49916 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LIG3P49916 BAHD1-203ENST00000561234 4698 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIG3P49916 KANK4-201ENST00000317477 2080 ntTSL 2 BASIC14.67□□□□□ -0.06
LIG3P49916 CACNA1G-214ENST00000505165 6633 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIG3P49916 CACNA1G-220ENST00000507896 6600 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIG3P49916 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC14.67□□□□□ -0.06
LIG3P49916 SLC46A1-208ENST00000618626 5363 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms