Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 BCL2-201ENST00000333681 3209 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SOX3P41225 PLA2G4B-201ENST00000452633 2985 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
SOX3P41225 GLB1L-201ENST00000295759 2745 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SOX3P41225 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
SOX3P41225 SLC22A23-202ENST00000380302 2883 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SOX3P41225 CARS-214ENST00000529772 2637 ntTSL 2 BASIC13.1□□□□□ -0.31
SOX3P41225 AC007952.5-201ENST00000572818 1486 ntBASIC13.1□□□□□ -0.31
SOX3P41225 BHLHE40-AS1-204ENST00000620618 2355 ntTSL 2 BASIC13.1□□□□□ -0.31
SOX3P41225 TBCE-207ENST00000543662 2117 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
SOX3P41225 FAM201A-201ENST00000377680 3437 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SOX3P41225 CPN1-201ENST00000370418 1863 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SOX3P41225 GLRX3-202ENST00000368644 3827 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
SOX3P41225 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC13.1□□□□□ -0.31
SOX3P41225 RXRG-204ENST00000619224 2252 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SOX3P41225 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
SOX3P41225 CNN2-202ENST00000348419 2033 ntTSL 2 BASIC13.1□□□□□ -0.31
SOX3P41225 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SOX3P41225 CD99L2-205ENST00000437787 3493 ntTSL 2 BASIC13.1□□□□□ -0.31
SOX3P41225 BAIAP3-201ENST00000324385 4678 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
SOX3P41225 TSC22D3-204ENST00000372384 2199 ntTSL 2 BASIC13.1□□□□□ -0.31
SOX3P41225 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC13.1□□□□□ -0.31
SOX3P41225 ZSCAN16-AS1-201ENST00000600652 2163 ntTSL 2 BASIC13.1□□□□□ -0.31
SOX3P41225 ARHGEF2-201ENST00000313667 2958 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SOX3P41225 MICB-202ENST00000399150 2346 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SOX3P41225 DMTN-220ENST00000523266 2735 ntTSL 5 BASIC13.1□□□□□ -0.31
SOX3P41225 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC13.1□□□□□ -0.31
SOX3P41225 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SOX3P41225 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC13.1□□□□□ -0.31
SOX3P41225 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SOX3P41225 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC13.1□□□□□ -0.31
SOX3P41225 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC13.1□□□□□ -0.31
SOX3P41225 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC13.1□□□□□ -0.31
SOX3P41225 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC13.1□□□□□ -0.31
SOX3P41225 NEU3-205ENST00000531619 582 ntTSL 5 BASIC13.1□□□□□ -0.31
SOX3P41225 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC13.1□□□□□ -0.31
SOX3P41225 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC13.1□□□□□ -0.31
SOX3P41225 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC13.1□□□□□ -0.31
SOX3P41225 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SOX3P41225 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC13.1□□□□□ -0.31
SOX3P41225 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC13.1□□□□□ -0.31
SOX3P41225 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC13.1□□□□□ -0.31
SOX3P41225 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC13.1□□□□□ -0.31
SOX3P41225 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC13.1□□□□□ -0.31
SOX3P41225 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC13.1□□□□□ -0.31
SOX3P41225 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC13.1□□□□□ -0.31
SOX3P41225 AC051619.9-201ENST00000623237 597 ntBASIC13.1□□□□□ -0.31
SOX3P41225 ADGRA1-201ENST00000392606 3438 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SOX3P41225 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC13.1□□□□□ -0.31
SOX3P41225 EGR2-201ENST00000242480 2968 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SOX3P41225 CYB5A-202ENST00000340533 3283 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SOX3P41225 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC13.1□□□□□ -0.31
SOX3P41225 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC13.1□□□□□ -0.31
SOX3P41225 PRKN-205ENST00000366897 2877 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SOX3P41225 OS9-206ENST00000435406 2346 ntTSL 2 BASIC13.1□□□□□ -0.31
SOX3P41225 RNF43-205ENST00000581868 2610 ntTSL 2 BASIC13.09□□□□□ -0.31
SOX3P41225 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC13.09□□□□□ -0.31
SOX3P41225 CDC45-205ENST00000437685 2072 ntTSL 2 BASIC13.09□□□□□ -0.31
SOX3P41225 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC13.09□□□□□ -0.31
SOX3P41225 GSE1-203ENST00000405402 4366 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
SOX3P41225 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
SOX3P41225 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
SOX3P41225 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SOX3P41225 CAP1-203ENST00000372797 3105 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
SOX3P41225 PDHA1-212ENST00000540249 3277 ntTSL 2 BASIC13.09□□□□□ -0.31
SOX3P41225 LSM14A-203ENST00000544216 3596 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
SOX3P41225 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SOX3P41225 PTPRH-202ENST00000376350 3877 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
SOX3P41225 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC13.09□□□□□ -0.31
SOX3P41225 KIAA0930-201ENST00000251993 2723 ntTSL 2 BASIC13.09□□□□□ -0.31
SOX3P41225 RGS3-205ENST00000374134 2862 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SOX3P41225 PNMA5-205ENST00000535214 3198 ntAPPRIS P2 TSL 3 BASIC13.09□□□□□ -0.31
SOX3P41225 SLC35F2-203ENST00000525071 3331 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
SOX3P41225 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
SOX3P41225 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC13.09□□□□□ -0.31
SOX3P41225 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC13.09□□□□□ -0.31
SOX3P41225 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SOX3P41225 BAX-205ENST00000391871 687 ntTSL 5 BASIC13.09□□□□□ -0.31
SOX3P41225 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SOX3P41225 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
SOX3P41225 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SOX3P41225 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SOX3P41225 FTLP1-201ENST00000449155 526 ntBASIC13.09□□□□□ -0.31
SOX3P41225 FGFR3P1-201ENST00000449999 601 ntBASIC13.09□□□□□ -0.31
SOX3P41225 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SOX3P41225 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
SOX3P41225 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC13.09□□□□□ -0.31
SOX3P41225 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SOX3P41225 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC13.09□□□□□ -0.31
SOX3P41225 CRISPLD2-209ENST00000567845 2178 ntAPPRIS ALT1 TSL 5 BASIC13.09□□□□□ -0.31
SOX3P41225 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC13.09□□□□□ -0.31
SOX3P41225 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC13.09□□□□□ -0.31
SOX3P41225 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
SOX3P41225 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC13.09□□□□□ -0.31
SOX3P41225 USH1G-202ENST00000614341 3558 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SOX3P41225 CCDC142-202ENST00000393965 3406 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
SOX3P41225 CALB1-201ENST00000265431 2533 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SOX3P41225 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC13.09□□□□□ -0.31
SOX3P41225 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SOX3P41225 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
SOX3P41225 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 74.7 ms