Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 PASK-201ENST00000234040 4572 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
CXCL1P09341 PISD-203ENST00000397500 2194 ntTSL 5 BASIC10.76□□□□□ -0.69
CXCL1P09341 STIM1-209ENST00000527651 2184 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
CXCL1P09341 CR2-203ENST00000367059 3877 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
CXCL1P09341 IL12A-AS1-203ENST00000497452 2425 ntTSL 2 BASIC10.76□□□□□ -0.69
CXCL1P09341 ARMCX2-203ENST00000356824 2674 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
CXCL1P09341 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC10.76□□□□□ -0.69
CXCL1P09341 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
CXCL1P09341 LAIR1-201ENST00000348231 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC10.76□□□□□ -0.69
CXCL1P09341 ADCK1-202ENST00000341211 1972 ntTSL 2 BASIC10.76□□□□□ -0.69
CXCL1P09341 CANX-209ENST00000504734 2232 ntAPPRIS P1 TSL 2 BASIC10.76□□□□□ -0.69
CXCL1P09341 HERC6-203ENST00000380265 3781 ntAPPRIS ALT2 TSL 1 (best) BASIC10.76□□□□□ -0.69
CXCL1P09341 SCN8A-202ENST00000355133 5820 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
CXCL1P09341 SPDYA-202ENST00000379579 1759 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
CXCL1P09341 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC10.76□□□□□ -0.69
CXCL1P09341 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
CXCL1P09341 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
CXCL1P09341 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
CXCL1P09341 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC10.76□□□□□ -0.69
CXCL1P09341 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC10.76□□□□□ -0.69
CXCL1P09341 SNORA50C-201ENST00000408535 133 ntBASIC10.76□□□□□ -0.69
CXCL1P09341 BX842568.4-201ENST00000421222 227 ntBASIC10.76□□□□□ -0.69
CXCL1P09341 TSEN15P1-201ENST00000423257 515 ntBASIC10.76□□□□□ -0.69
CXCL1P09341 TSSK5P-201ENST00000423978 907 ntBASIC10.76□□□□□ -0.69
CXCL1P09341 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
CXCL1P09341 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC10.76□□□□□ -0.69
CXCL1P09341 AL589987.1-201ENST00000453380 819 ntBASIC10.76□□□□□ -0.69
CXCL1P09341 INE1-201ENST00000456273 945 ntBASIC10.76□□□□□ -0.69
CXCL1P09341 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
CXCL1P09341 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
CXCL1P09341 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC10.76□□□□□ -0.69
CXCL1P09341 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
CXCL1P09341 AC097493.3-201ENST00000509725 367 ntBASIC10.76□□□□□ -0.69
CXCL1P09341 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC10.76□□□□□ -0.69
CXCL1P09341 AP001582.1-201ENST00000525856 295 ntBASIC10.76□□□□□ -0.69
CXCL1P09341 AC135586.1-201ENST00000539323 574 ntBASIC10.76□□□□□ -0.69
CXCL1P09341 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC10.76□□□□□ -0.69
CXCL1P09341 AC005586.2-201ENST00000563946 837 ntBASIC10.76□□□□□ -0.69
CXCL1P09341 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC10.76□□□□□ -0.69
CXCL1P09341 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC10.76□□□□□ -0.69
CXCL1P09341 AC010327.4-202ENST00000591484 748 ntBASIC10.76□□□□□ -0.69
CXCL1P09341 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
CXCL1P09341 AL671883.3-201ENST00000603274 991 ntBASIC10.76□□□□□ -0.69
CXCL1P09341 AC099568.2-201ENST00000609194 695 ntBASIC10.76□□□□□ -0.69
CXCL1P09341 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC10.76□□□□□ -0.69
CXCL1P09341 SNORA50.1-201ENST00000628590 135 ntBASIC10.76□□□□□ -0.69
CXCL1P09341 LRCH1-203ENST00000389798 4131 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
CXCL1P09341 INSC-205ENST00000525218 1576 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
CXCL1P09341 SLC5A11-202ENST00000424767 2399 ntTSL 2 BASIC10.76□□□□□ -0.69
CXCL1P09341 KIF13A-201ENST00000259711 5941 ntAPPRIS P4 TSL 1 (best) BASIC10.76□□□□□ -0.69
CXCL1P09341 TSNAXIP1-201ENST00000388833 2429 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
CXCL1P09341 PLB1-205ENST00000422425 5115 ntAPPRIS ALT2 TSL 1 (best) BASIC10.76□□□□□ -0.69
CXCL1P09341 SMC4-202ENST00000357388 5471 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
CXCL1P09341 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
CXCL1P09341 NAP1L1-201ENST00000261182 4441 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
CXCL1P09341 KCTD10-201ENST00000228495 4163 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
CXCL1P09341 FAM222B-209ENST00000581407 4161 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
CXCL1P09341 NT5C3AP1-202ENST00000441170 1663 ntBASIC10.76□□□□□ -0.69
CXCL1P09341 AKAP1-208ENST00000572557 3098 ntAPPRIS P1 TSL 5 BASIC10.76□□□□□ -0.69
CXCL1P09341 SCARB2-215ENST00000639145 4471 ntAPPRIS ALT1 TSL 5 BASIC10.76□□□□□ -0.69
CXCL1P09341 RASAL1-201ENST00000261729 3382 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
CXCL1P09341 ATP2C2-201ENST00000262429 3376 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
CXCL1P09341 RTL10-202ENST00000405640 6785 ntAPPRIS P2 TSL 1 (best) BASIC10.76□□□□□ -0.69
CXCL1P09341 PLSCR4-203ENST00000433593 2839 ntTSL 2 BASIC10.76□□□□□ -0.69
CXCL1P09341 MSTO2P-201ENST00000314835 1709 ntBASIC10.75□□□□□ -0.69
CXCL1P09341 PLAGL1-209ENST00000444202 3197 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CXCL1P09341 CAT-201ENST00000241052 2302 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CXCL1P09341 CMIP-202ENST00000537098 4357 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CXCL1P09341 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CXCL1P09341 DCLRE1C-210ENST00000378289 3532 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
CXCL1P09341 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CXCL1P09341 SCRN1-207ENST00000434476 1454 ntTSL 2 BASIC10.75□□□□□ -0.69
CXCL1P09341 AC061965.1-201ENST00000560524 1465 ntBASIC10.75□□□□□ -0.69
CXCL1P09341 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC10.75□□□□□ -0.69
CXCL1P09341 RCBTB2-206ENST00000544904 2984 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CXCL1P09341 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC10.75□□□□□ -0.69
CXCL1P09341 MYADM-204ENST00000391770 3056 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CXCL1P09341 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC10.75□□□□□ -0.69
CXCL1P09341 MSH6-215ENST00000622629 4324 ntTSL 5 BASIC10.75□□□□□ -0.69
CXCL1P09341 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC10.75□□□□□ -0.69
CXCL1P09341 TMEM220-201ENST00000341871 3106 ntAPPRIS P3 TSL 1 (best) BASIC10.75□□□□□ -0.69
CXCL1P09341 GRIK1-203ENST00000389125 3140 ntAPPRIS P3 TSL 1 (best) BASIC10.75□□□□□ -0.69
CXCL1P09341 SLC26A8-202ENST00000394602 3144 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
CXCL1P09341 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC10.75□□□□□ -0.69
CXCL1P09341 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CXCL1P09341 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CXCL1P09341 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
CXCL1P09341 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
CXCL1P09341 VMA21-202ENST00000370361 693 ntTSL 5 BASIC10.75□□□□□ -0.69
CXCL1P09341 RPF1-202ENST00000370656 724 ntTSL 2 BASIC10.75□□□□□ -0.69
CXCL1P09341 APOA1-205ENST00000375329 927 ntTSL 2 BASIC10.75□□□□□ -0.69
CXCL1P09341 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC10.75□□□□□ -0.69
CXCL1P09341 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC10.75□□□□□ -0.69
CXCL1P09341 PGGT1BP2-201ENST00000398621 1028 ntBASIC10.75□□□□□ -0.69
CXCL1P09341 SOCS2P1-201ENST00000417727 557 ntBASIC10.75□□□□□ -0.69
CXCL1P09341 PMS2P2-201ENST00000425039 1128 ntBASIC10.75□□□□□ -0.69
CXCL1P09341 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC10.75□□□□□ -0.69
CXCL1P09341 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC10.75□□□□□ -0.69
CXCL1P09341 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC10.75□□□□□ -0.69
CXCL1P09341 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC10.75□□□□□ -0.69
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms