Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 GTF2F1-201ENST00000394456 2731 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 HPSE2-202ENST00000370549 2121 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 ABCB8-202ENST00000358849 4683 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC13.54□□□□□ -0.24
CCDC28BQ9BUN5 LITAF-203ENST00000413364 2292 ntTSL 2 BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 HTR4-203ENST00000377888 2962 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 TCF3-201ENST00000262965 4451 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 SEZ6L-201ENST00000248933 3248 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 SEZ6L-210ENST00000629590 3215 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 RBM47-201ENST00000295971 4056 ntAPPRIS ALT1 TSL 5 BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 NFATC1-204ENST00000397790 3453 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 SNCAIP-222ENST00000542191 2729 ntTSL 5 BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 LINC01024-201ENST00000499203 2769 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 JADE1-209ENST00000511647 3560 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 SLC38A7-201ENST00000219320 4392 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 VHL-201ENST00000256474 3737 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 PAX8-202ENST00000263335 3735 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 EPB42-203ENST00000540029 2098 ntTSL 2 BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 ZNF595-205ENST00000610261 2911 ntAPPRIS P4 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 RN7SL837P-201ENST00000463010 287 ntBASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 AC100827.2-201ENST00000563214 1194 ntBASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 STAT6-202ENST00000454075 3037 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 AC108002.1-201ENST00000520572 5684 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 ACER1-201ENST00000301452 1445 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 KLKP1-203ENST00000600104 1532 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 CACNB1-202ENST00000394303 3742 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 KRT15-202ENST00000393974 3758 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 ARRDC5-201ENST00000381781 1638 ntAPPRIS P1 TSL 3 BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 CCT7P1-201ENST00000406551 1611 ntBASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 GRM1-202ENST00000355289 3874 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 ZNF792-201ENST00000404801 3888 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 GABRR2-201ENST00000402938 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 DPH2-202ENST00000396758 1738 ntTSL 3 BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 ADAMTSL2-201ENST00000354484 4068 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 IL12RB1-207ENST00000600835 2901 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 ZFYVE19-202ENST00000336455 1784 ntTSL 2 BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 INTS13-201ENST00000261191 2974 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 MAOA-204ENST00000542639 5438 ntTSL 2 BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 PNMA5-204ENST00000452693 3113 ntAPPRIS P2 TSL 2 BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 DIO1-216ENST00000613679 1856 ntAPPRIS ALT1 TSL 5 BASIC13.53□□□□□ -0.24
CCDC28BQ9BUN5 ARHGEF9-226ENST00000636392 1920 ntTSL 5 BASIC13.52□□□□□ -0.24
CCDC28BQ9BUN5 MON1B-201ENST00000248248 6091 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CCDC28BQ9BUN5 AC019205.2-203ENST00000421315 3362 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
CCDC28BQ9BUN5 POLD1-201ENST00000440232 3444 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CCDC28BQ9BUN5 AL031687.1-201ENST00000450586 2137 ntTSL 2 BASIC13.52□□□□□ -0.24
CCDC28BQ9BUN5 DACH2-201ENST00000373125 2232 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
CCDC28BQ9BUN5 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CCDC28BQ9BUN5 BAIAP3-203ENST00000421665 3875 ntTSL 2 BASIC13.52□□□□□ -0.24
CCDC28BQ9BUN5 PARP3-202ENST00000417220 2472 ntAPPRIS P3 TSL 5 BASIC13.52□□□□□ -0.24
CCDC28BQ9BUN5 MNT-201ENST00000174618 4996 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CCDC28BQ9BUN5 ATG7-201ENST00000354449 4959 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CCDC28BQ9BUN5 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC28BQ9BUN5 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC13.52□□□□□ -0.25
CCDC28BQ9BUN5 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC28BQ9BUN5 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC28BQ9BUN5 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC28BQ9BUN5 HLA-V-201ENST00000429037 534 ntBASIC13.52□□□□□ -0.25
CCDC28BQ9BUN5 XBP1P1-201ENST00000436573 652 ntBASIC13.52□□□□□ -0.25
CCDC28BQ9BUN5 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC13.52□□□□□ -0.25
CCDC28BQ9BUN5 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC28BQ9BUN5 AL162426.1-201ENST00000624141 743 ntBASIC13.52□□□□□ -0.25
CCDC28BQ9BUN5 CAPN5-201ENST00000278559 4397 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC28BQ9BUN5 C15orf39-202ENST00000394987 4430 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC28BQ9BUN5 AF013593.1-201ENST00000458074 1487 ntBASIC13.52□□□□□ -0.25
CCDC28BQ9BUN5 TRPC6-201ENST00000344327 4612 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC28BQ9BUN5 KIR2DL3-201ENST00000342376 1590 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC28BQ9BUN5 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
CCDC28BQ9BUN5 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC28BQ9BUN5 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC28BQ9BUN5 AC018629.1-201ENST00000623381 1736 ntBASIC13.52□□□□□ -0.25
CCDC28BQ9BUN5 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC13.52□□□□□ -0.25
CCDC28BQ9BUN5 EFHD1-203ENST00000409708 1817 ntTSL 2 BASIC13.52□□□□□ -0.25
CCDC28BQ9BUN5 MDH2-204ENST00000443006 2020 ntTSL 2 BASIC13.52□□□□□ -0.25
CCDC28BQ9BUN5 FAM86C1-202ENST00000359244 2110 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.25
CCDC28BQ9BUN5 ZWILCH-203ENST00000535141 2206 ntTSL 2 BASIC13.52□□□□□ -0.25
CCDC28BQ9BUN5 SLC23A1-202ENST00000353963 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC28BQ9BUN5 CPT1A-205ENST00000539743 2382 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
CCDC28BQ9BUN5 ALKBH1-201ENST00000216489 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC28BQ9BUN5 DHX58-201ENST00000251642 2617 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC28BQ9BUN5 MSH5-204ENST00000375755 3094 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC28BQ9BUN5 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms