Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 AP000354.1-201ENST00000396982 456 ntBASIC13.41□□□□□ -0.26
COL28A1Q2UY09 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 PYM1-203ENST00000408946 1226 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 AHCYP3-201ENST00000420053 1279 ntBASIC13.41□□□□□ -0.26
COL28A1Q2UY09 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 BX248123.1-201ENST00000429070 606 ntTSL 3 BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 PTPA-215ENST00000432124 567 ntTSL 4 BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 AC093609.1-201ENST00000434020 952 ntTSL 2 BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 RN7SL277P-201ENST00000481521 288 ntBASIC13.41□□□□□ -0.26
COL28A1Q2UY09 HINT1-205ENST00000508488 703 ntTSL 2 BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 AAMDC-210ENST00000532481 690 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 LAMTOR1-208ENST00000545249 965 ntTSL 3 BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 OSMR-AS1-204ENST00000636516 850 ntTSL 5 BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 NNMT-203ENST00000535401 1867 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 AC089987.1-201ENST00000551654 2209 ntBASIC13.41□□□□□ -0.26
COL28A1Q2UY09 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 HLF-202ENST00000430986 1385 ntTSL 2 BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 KRT8P28-201ENST00000433288 1390 ntBASIC13.41□□□□□ -0.26
COL28A1Q2UY09 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 NTRK3-AS1-201ENST00000569588 2663 ntTSL 2 BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 CAP2-209ENST00000616440 2776 ntTSL 2 BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 NIN-202ENST00000324330 4364 ntTSL 5 BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 NLRP13-201ENST00000342929 3132 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 ZBTB47-201ENST00000232974 3781 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 ABLIM2-213ENST00000514025 2974 ntTSL 2 BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 NCR1-204ENST00000357397 594 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 PIFO-201ENST00000369737 746 ntTSL 2 BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 SAT1-201ENST00000379251 801 ntTSL 2 BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 SAT1-202ENST00000379253 909 ntTSL 2 BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 SAT1-203ENST00000379254 868 ntTSL 3 BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 IFNA2-201ENST00000380206 1135 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 PRAME-206ENST00000406503 740 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 HNRNPA1P27-201ENST00000412087 955 ntBASIC13.4□□□□□ -0.26
COL28A1Q2UY09 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC13.4□□□□□ -0.26
COL28A1Q2UY09 AC098657.1-201ENST00000416270 1135 ntBASIC13.4□□□□□ -0.26
COL28A1Q2UY09 TXNL4B-203ENST00000426362 965 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 AL121987.1-201ENST00000435580 645 ntTSL 3 BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 TIMMDC1-207ENST00000493694 710 ntTSL 2 BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 BCRP4-201ENST00000506079 804 ntBASIC13.4□□□□□ -0.26
COL28A1Q2UY09 TGFBI-207ENST00000508076 1034 ntTSL 2 BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 C10orf113-201ENST00000529198 614 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 ANO3-205ENST00000531646 1264 ntTSL 4 BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 AC023968.2-201ENST00000560593 1049 ntBASIC13.4□□□□□ -0.26
COL28A1Q2UY09 RN7SL665P-201ENST00000578793 300 ntBASIC13.4□□□□□ -0.26
COL28A1Q2UY09 NMRK2-202ENST00000593949 869 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 NMRK2-204ENST00000599576 691 ntTSL 3 BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 LINC01588-216ENST00000623502 975 ntTSL 2 BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 AC020904.3-201ENST00000624199 442 ntBASIC13.4□□□□□ -0.26
COL28A1Q2UY09 LINC01002-234ENST00000633808 848 ntTSL 5 BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 AC215219.1-201ENST00000400706 1817 ntBASIC13.4□□□□□ -0.26
COL28A1Q2UY09 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL28A1Q2UY09 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms