Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 NEK3-205ENST00000610828 2396 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
MRE11P49959 BRD1-201ENST00000216267 4614 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
MRE11P49959 SPCS3-201ENST00000503362 4571 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
MRE11P49959 PLEKHB2-202ENST00000403716 4349 ntTSL 3 BASIC16.31■□□□□ 0.2
MRE11P49959 SPOUT1-201ENST00000361256 4286 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
MRE11P49959 FAM156A-208ENST00000615092 2098 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
MRE11P49959 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
MRE11P49959 MAGED1-201ENST00000326587 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
MRE11P49959 PIGG-205ENST00000503111 2629 ntTSL 2 BASIC16.31■□□□□ 0.2
MRE11P49959 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC16.3■□□□□ 0.2
MRE11P49959 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MRE11P49959 RANBP17-219ENST00000523189 4588 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MRE11P49959 TXNDC17-201ENST00000250101 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MRE11P49959 BAIAP3-207ENST00000562208 3663 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
MRE11P49959 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MRE11P49959 CMIP-208ENST00000566462 3512 ntTSL 4 BASIC16.3■□□□□ 0.2
MRE11P49959 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
MRE11P49959 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
MRE11P49959 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MRE11P49959 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
MRE11P49959 AL139094.1-201ENST00000405549 1188 ntBASIC16.3■□□□□ 0.2
MRE11P49959 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC16.3■□□□□ 0.2
MRE11P49959 RAD18-204ENST00000418463 563 ntTSL 4 BASIC16.3■□□□□ 0.2
MRE11P49959 RAD18-205ENST00000421052 582 ntTSL 3 BASIC16.3■□□□□ 0.2
MRE11P49959 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
MRE11P49959 MAGEA5-201ENST00000446757 942 ntBASIC16.3■□□□□ 0.2
MRE11P49959 FAM86HP-204ENST00000513466 959 ntBASIC16.3■□□□□ 0.2
MRE11P49959 AC022616.1-201ENST00000518688 554 ntBASIC16.3■□□□□ 0.2
MRE11P49959 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC16.3■□□□□ 0.2
MRE11P49959 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC16.3■□□□□ 0.2
MRE11P49959 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC16.3■□□□□ 0.2
MRE11P49959 AC005586.2-201ENST00000563946 837 ntBASIC16.3■□□□□ 0.2
MRE11P49959 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC16.3■□□□□ 0.2
MRE11P49959 MIR5189-201ENST00000577370 114 ntBASIC16.3■□□□□ 0.2
MRE11P49959 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC16.3■□□□□ 0.2
MRE11P49959 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC16.3■□□□□ 0.2
MRE11P49959 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC16.3■□□□□ 0.2
MRE11P49959 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC16.3■□□□□ 0.2
MRE11P49959 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC16.3■□□□□ 0.2
MRE11P49959 OCA2-202ENST00000354638 3186 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
MRE11P49959 SARS-202ENST00000369923 1882 ntTSL 5 BASIC16.3■□□□□ 0.2
MRE11P49959 GNPDA1-210ENST00000508177 2980 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MRE11P49959 NFATC1-203ENST00000329101 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
MRE11P49959 RBPJ-203ENST00000345843 1682 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
MRE11P49959 CYP24A1-203ENST00000395955 2227 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
MRE11P49959 AC092139.4-201ENST00000624318 2794 ntBASIC16.3■□□□□ 0.2
MRE11P49959 PREX1-201ENST00000371941 6636 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MRE11P49959 SLC47A1-201ENST00000270570 3280 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MRE11P49959 NTRK2-203ENST00000323115 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MRE11P49959 FAM71E2-201ENST00000424985 3191 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
MRE11P49959 DYRK4-214ENST00000543431 2068 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
MRE11P49959 FOXN3-201ENST00000261302 2542 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
MRE11P49959 DYNC1LI1-201ENST00000273130 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
MRE11P49959 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
MRE11P49959 FLJ30679-201ENST00000624773 1980 ntBASIC16.29■□□□□ 0.2
MRE11P49959 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
MRE11P49959 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
MRE11P49959 CSF3R-201ENST00000331941 2375 ntTSL 5 BASIC16.29■□□□□ 0.2
MRE11P49959 B4GALT4-201ENST00000359213 2385 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
MRE11P49959 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
MRE11P49959 AC015712.2-201ENST00000560351 3688 ntTSL 2 BASIC16.29■□□□□ 0.2
MRE11P49959 EFHD1-203ENST00000409708 1817 ntTSL 2 BASIC16.29■□□□□ 0.2
MRE11P49959 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC16.29■□□□□ 0.2
MRE11P49959 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
MRE11P49959 LAMB1-201ENST00000222399 5725 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
MRE11P49959 LDLRAD4-AS1-201ENST00000588672 2190 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
MRE11P49959 HERC6-202ENST00000273960 3473 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
MRE11P49959 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
MRE11P49959 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
MRE11P49959 PKIG-203ENST00000372887 769 ntTSL 3 BASIC16.29■□□□□ 0.2
MRE11P49959 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
MRE11P49959 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
MRE11P49959 LSM5-207ENST00000410044 687 ntTSL 3 BASIC16.29■□□□□ 0.2
MRE11P49959 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
MRE11P49959 REEP1-202ENST00000453231 940 ntTSL 2 BASIC16.29■□□□□ 0.2
MRE11P49959 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC16.29■□□□□ 0.2
MRE11P49959 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC16.29■□□□□ 0.2
MRE11P49959 IMP3P2-201ENST00000489760 475 ntBASIC16.29■□□□□ 0.2
MRE11P49959 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
MRE11P49959 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC16.29■□□□□ 0.2
MRE11P49959 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
MRE11P49959 ABBA01031660.1-201ENST00000635219 756 ntBASIC16.29■□□□□ 0.2
MRE11P49959 AC138627.1-207ENST00000641560 1006 ntBASIC16.29■□□□□ 0.2
MRE11P49959 PPP1R11-204ENST00000376769 1689 ntTSL 2 BASIC16.29■□□□□ 0.2
MRE11P49959 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC16.29■□□□□ 0.2
MRE11P49959 ITGA2B-201ENST00000262407 3333 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
MRE11P49959 NIPSNAP3A-201ENST00000374767 1633 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
MRE11P49959 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
MRE11P49959 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC16.29■□□□□ 0.2
MRE11P49959 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
MRE11P49959 RGS16-201ENST00000367558 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
MRE11P49959 MKL1-210ENST00000614754 3917 ntTSL 5 BASIC16.29■□□□□ 0.2
MRE11P49959 ABI2-201ENST00000261016 6634 ntTSL 2 BASIC16.29■□□□□ 0.2
MRE11P49959 ABI2-203ENST00000261018 6638 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
MRE11P49959 SESN2-201ENST00000253063 3453 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
MRE11P49959 ANAPC7-203ENST00000455511 3045 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
MRE11P49959 AL359510.2-201ENST00000624958 2249 ntBASIC16.29■□□□□ 0.2
MRE11P49959 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
MRE11P49959 KCNIP3-201ENST00000295225 2940 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
MRE11P49959 AC092117.1-201ENST00000621230 3250 ntBASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms