Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 CPLX4-201ENST00000299721 1966 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A3P12111 TMEM101-205ENST00000589334 1830 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
COL6A3P12111 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A3P12111 LINC02226-201ENST00000501071 1587 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A3P12111 AC020763.3-201ENST00000625095 2904 ntBASIC13.72□□□□□ -0.21
COL6A3P12111 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A3P12111 GNAS-209ENST00000371081 730 ntTSL 2 BASIC13.72□□□□□ -0.21
COL6A3P12111 LINC00484-201ENST00000414768 561 ntTSL 5 BASIC13.72□□□□□ -0.21
COL6A3P12111 LINC01678-202ENST00000424921 475 ntTSL 3 BASIC13.72□□□□□ -0.21
COL6A3P12111 AL662860.1-201ENST00000436804 877 ntTSL 5 BASIC13.72□□□□□ -0.21
COL6A3P12111 UCMA-202ENST00000463405 763 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
COL6A3P12111 AL391832.3-201ENST00000549744 846 ntTSL 3 BASIC13.72□□□□□ -0.21
COL6A3P12111 RN7SL784P-201ENST00000577319 342 ntBASIC13.72□□□□□ -0.21
COL6A3P12111 AC022211.3-201ENST00000584339 400 ntTSL 3 BASIC13.72□□□□□ -0.21
COL6A3P12111 SNRPD2-207ENST00000588599 805 ntTSL 3 BASIC13.72□□□□□ -0.21
COL6A3P12111 MEST-206ENST00000416162 2158 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A3P12111 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A3P12111 TCAF2-201ENST00000357344 2958 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A3P12111 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
COL6A3P12111 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
COL6A3P12111 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A3P12111 HSD3B2-206ENST00000543831 1783 ntAPPRIS P1 TSL 3 BASIC13.72□□□□□ -0.21
COL6A3P12111 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A3P12111 AC024075.2-201ENST00000598112 1473 ntBASIC13.71□□□□□ -0.21
COL6A3P12111 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A3P12111 JAML-202ENST00000356289 1944 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A3P12111 NAA50-203ENST00000477813 1945 ntTSL 5 BASIC13.71□□□□□ -0.21
COL6A3P12111 IGHV1-2-201ENST00000390594 417 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
COL6A3P12111 AP000692.1-201ENST00000397184 596 ntTSL 5 BASIC13.71□□□□□ -0.21
COL6A3P12111 AK2-206ENST00000480134 811 ntTSL 2 BASIC13.71□□□□□ -0.21
COL6A3P12111 SAP30L-AS1-202ENST00000519727 396 ntTSL 3 BASIC13.71□□□□□ -0.21
COL6A3P12111 AL392023.1-201ENST00000555655 531 ntTSL 3 BASIC13.71□□□□□ -0.21
COL6A3P12111 APOC1P1-202ENST00000571466 253 ntBASIC13.71□□□□□ -0.21
COL6A3P12111 IGHV1OR15-1-201ENST00000604066 353 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
COL6A3P12111 AC135068.8-201ENST00000630556 353 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
COL6A3P12111 CD34-203ENST00000367036 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A3P12111 TRIM60-201ENST00000341062 1867 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
COL6A3P12111 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A3P12111 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A3P12111 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC13.71□□□□□ -0.21
COL6A3P12111 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC13.71□□□□□ -0.21
COL6A3P12111 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
COL6A3P12111 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A3P12111 EML1-203ENST00000334192 4064 ntTSL 5 BASIC13.71□□□□□ -0.21
COL6A3P12111 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A3P12111 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
COL6A3P12111 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A3P12111 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
COL6A3P12111 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A3P12111 OR2T1-201ENST00000366474 1110 ntBASIC13.71□□□□□ -0.21
COL6A3P12111 C22orf15-203ENST00000402217 829 ntAPPRIS P3 TSL 2 BASIC13.71□□□□□ -0.21
COL6A3P12111 AC245052.2-201ENST00000413723 327 ntBASIC13.71□□□□□ -0.21
COL6A3P12111 AL445933.2-201ENST00000440249 265 ntTSL 2 BASIC13.71□□□□□ -0.21
COL6A3P12111 AC091588.2-201ENST00000578741 366 ntTSL 3 BASIC13.71□□□□□ -0.21
COL6A3P12111 LINC00663-207ENST00000590092 1023 ntTSL 5 BASIC13.71□□□□□ -0.21
COL6A3P12111 AC108673.2-201ENST00000608909 565 ntBASIC13.71□□□□□ -0.21
COL6A3P12111 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A3P12111 HVCN1-209ENST00000620084 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A3P12111 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC13.71□□□□□ -0.21
COL6A3P12111 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A3P12111 SNCAIP-203ENST00000379538 2588 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
COL6A3P12111 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.22
COL6A3P12111 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
COL6A3P12111 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
COL6A3P12111 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC13.71□□□□□ -0.22
COL6A3P12111 AC092295.2-201ENST00000592087 1392 ntBASIC13.71□□□□□ -0.22
COL6A3P12111 ARF4-201ENST00000303436 1660 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
COL6A3P12111 CYP20A1-210ENST00000613925 1986 ntTSL 2 BASIC13.71□□□□□ -0.22
COL6A3P12111 TREM2-201ENST00000338469 860 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
COL6A3P12111 KRTAP4-5-201ENST00000343246 879 ntAPPRIS P1 BASIC13.71□□□□□ -0.22
COL6A3P12111 LST1-205ENST00000376089 680 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
COL6A3P12111 LST1-206ENST00000376090 689 ntTSL 2 BASIC13.71□□□□□ -0.22
COL6A3P12111 LST1-210ENST00000376099 610 ntTSL 2 BASIC13.71□□□□□ -0.22
COL6A3P12111 LST1-214ENST00000418507 726 ntTSL 2 BASIC13.71□□□□□ -0.22
COL6A3P12111 LST1-217ENST00000438075 764 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
COL6A3P12111 AL772155.2-201ENST00000443910 472 ntBASIC13.71□□□□□ -0.22
COL6A3P12111 PRDX2P2-201ENST00000451920 587 ntBASIC13.71□□□□□ -0.22
COL6A3P12111 DDX41-218ENST00000625286 150 ntTSL 5 BASIC13.71□□□□□ -0.22
COL6A3P12111 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
COL6A3P12111 MUC1-225ENST00000612778 1836 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
COL6A3P12111 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A3P12111 DAXX-203ENST00000414083 2355 ntTSL 2 BASIC13.7□□□□□ -0.22
COL6A3P12111 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC13.7□□□□□ -0.22
COL6A3P12111 CYP2B7P-201ENST00000541697 1476 ntBASIC13.7□□□□□ -0.22
COL6A3P12111 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A3P12111 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A3P12111 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A3P12111 AGK-211ENST00000629555 2765 ntTSL 5 BASIC13.7□□□□□ -0.22
COL6A3P12111 TNFAIP3-211ENST00000621150 1613 ntTSL 5 BASIC13.7□□□□□ -0.22
COL6A3P12111 AHCYP7-201ENST00000560847 1308 ntBASIC13.7□□□□□ -0.22
COL6A3P12111 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
COL6A3P12111 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A3P12111 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A3P12111 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A3P12111 MSMP-202ENST00000436428 670 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL6A3P12111 AC005077.3-201ENST00000449614 213 ntBASIC13.7□□□□□ -0.22
COL6A3P12111 RPL7AP11-201ENST00000486538 799 ntBASIC13.7□□□□□ -0.22
COL6A3P12111 AC084033.3-203ENST00000546580 571 ntTSL 2 BASIC13.7□□□□□ -0.22
COL6A3P12111 AC090236.1-201ENST00000590318 768 ntTSL 2 BASIC13.7□□□□□ -0.22
COL6A3P12111 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC13.7□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms