Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 FAM90A24P-201ENST00000520792 2369 ntBASIC17.15■□□□□ 0.34
SHANK3Q9BYB0 AC018445.4-201ENST00000624066 2291 ntBASIC17.15■□□□□ 0.34
SHANK3Q9BYB0 LINC01285-204ENST00000634601 1947 ntTSL 5 BASIC17.15■□□□□ 0.34
SHANK3Q9BYB0 TTC26-207ENST00000478836 1794 ntTSL 2 BASIC17.15■□□□□ 0.34
SHANK3Q9BYB0 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SHANK3Q9BYB0 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC17.15■□□□□ 0.34
SHANK3Q9BYB0 CYP4F12-201ENST00000324632 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SHANK3Q9BYB0 BX005132.1-201ENST00000641403 1580 ntBASIC17.15■□□□□ 0.34
SHANK3Q9BYB0 ANP32B-201ENST00000339399 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SHANK3Q9BYB0 MIR766-201ENST00000390223 111 ntBASIC17.15■□□□□ 0.34
SHANK3Q9BYB0 AC105935.1-203ENST00000419183 600 ntTSL 3 BASIC17.15■□□□□ 0.34
SHANK3Q9BYB0 RN7SL452P-201ENST00000482923 291 ntBASIC17.15■□□□□ 0.34
SHANK3Q9BYB0 LINC01606-208ENST00000521653 557 ntTSL 4 BASIC17.15■□□□□ 0.34
SHANK3Q9BYB0 AC025419.1-201ENST00000537250 690 ntTSL 3 BASIC17.15■□□□□ 0.34
SHANK3Q9BYB0 SMIM22-206ENST00000589327 629 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
SHANK3Q9BYB0 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SHANK3Q9BYB0 GUCY1B3-207ENST00000513437 2355 ntTSL 2 BASIC17.15■□□□□ 0.34
SHANK3Q9BYB0 CDC42-202ENST00000344548 2256 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SHANK3Q9BYB0 ADD1-207ENST00000446856 3745 ntTSL 5 BASIC17.15■□□□□ 0.34
SHANK3Q9BYB0 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
SHANK3Q9BYB0 AC011474.4-201ENST00000623523 2076 ntBASIC17.14■□□□□ 0.34
SHANK3Q9BYB0 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC17.14■□□□□ 0.34
SHANK3Q9BYB0 APTX-201ENST00000309615 1859 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
SHANK3Q9BYB0 NT5DC4-201ENST00000327581 1767 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SHANK3Q9BYB0 PSMA1-201ENST00000396394 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SHANK3Q9BYB0 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.14■□□□□ 0.33
SHANK3Q9BYB0 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SHANK3Q9BYB0 CD8B-202ENST00000349455 849 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SHANK3Q9BYB0 UGT1A6-202ENST00000373424 1128 ntTSL 2 BASIC17.14■□□□□ 0.33
SHANK3Q9BYB0 TRIM15-206ENST00000376688 426 ntTSL 5 BASIC17.14■□□□□ 0.33
SHANK3Q9BYB0 NAA10-205ENST00000393712 908 ntTSL 5 BASIC17.14■□□□□ 0.33
SHANK3Q9BYB0 AL929472.4-201ENST00000447422 691 ntBASIC17.14■□□□□ 0.33
SHANK3Q9BYB0 AL110503.1-201ENST00000457224 534 ntTSL 3 BASIC17.14■□□□□ 0.33
SHANK3Q9BYB0 AC103876.1-203ENST00000565495 290 ntTSL 5 BASIC17.14■□□□□ 0.33
SHANK3Q9BYB0 MIR5193-201ENST00000584510 109 ntBASIC17.14■□□□□ 0.33
SHANK3Q9BYB0 AC093072.1-201ENST00000589196 602 ntTSL 4 BASIC17.14■□□□□ 0.33
SHANK3Q9BYB0 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
SHANK3Q9BYB0 DLX1-203ENST00000361725 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SHANK3Q9BYB0 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SHANK3Q9BYB0 AL365181.3-201ENST00000605886 3222 ntBASIC17.14■□□□□ 0.33
SHANK3Q9BYB0 SLC2A14-205ENST00000535295 1732 ntTSL 2 BASIC17.14■□□□□ 0.33
SHANK3Q9BYB0 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
SHANK3Q9BYB0 LDLRAD1-203ENST00000420619 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
SHANK3Q9BYB0 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SHANK3Q9BYB0 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
SHANK3Q9BYB0 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SHANK3Q9BYB0 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
SHANK3Q9BYB0 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 FOLR1-203ENST00000393679 1331 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 MYL7-201ENST00000223364 612 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 FCRLA-202ENST00000294796 766 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 OBP2A-203ENST00000371776 689 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 SNCG-202ENST00000372017 701 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 PRADC1P1-201ENST00000412317 525 ntBASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 TUBB8P9-201ENST00000422534 1276 ntBASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 AC007312.1-201ENST00000427493 258 ntBASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 TUBB8P10-201ENST00000430210 1279 ntBASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 AL606970.2-201ENST00000434596 470 ntTSL 3 BASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 AL137077.1-201ENST00000442115 528 ntBASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 CDCA4P3-201ENST00000442572 689 ntBASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 AL049597.1-201ENST00000447415 555 ntBASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 ZFYVE1-206ENST00000555072 1225 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 NPTN-205ENST00000563691 1214 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 AC138305.1-201ENST00000568932 561 ntTSL 5 BASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 AL138828.1-208ENST00000585946 824 ntTSL 5 BASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 AC008764.4-207ENST00000600705 956 ntTSL 2 BASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 AL807742.1-201ENST00000636678 1160 ntTSL 5 BASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 GDA-203ENST00000376986 1771 ntTSL 2 BASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 FUT3-207ENST00000589620 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 SLC29A4-201ENST00000297195 2839 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 ZNF384-204ENST00000396801 3008 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 TARS2-205ENST00000438568 2188 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 AC008040.5-201ENST00000599781 1781 ntBASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 PHF5A-201ENST00000216252 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 OR52L1-201ENST00000332249 1094 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 TPM3P7-201ENST00000338274 732 ntBASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 PLAC9P1-203ENST00000440031 223 ntBASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 ROPN1L-AS1-201ENST00000513037 189 ntTSL 2 BASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 LINC02182-201ENST00000569362 498 ntTSL 2 BASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 MIR22HG-206ENST00000573127 899 ntTSL 3 BASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 MED11-203ENST00000575284 652 ntTSL 3 BASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 MIR4459-201ENST00000581837 66 ntBASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 MIR4309-201ENST00000582498 83 ntBASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 AC012615.6-203ENST00000590531 272 ntTSL 2 BASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 SLC50A1-214ENST00000622581 1245 ntTSL 5 BASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 AC093495.1-215ENST00000626655 821 ntTSL 5 BASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC17.13■□□□□ 0.33
SHANK3Q9BYB0 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHANK3Q9BYB0 ZNF114-201ENST00000315849 2206 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
SHANK3Q9BYB0 PCTP-202ENST00000325214 1856 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SHANK3Q9BYB0 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 221.9 ms