Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 ATXN3-201ENST00000340660 1205 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 MIR645-201ENST00000385283 94 ntBASIC13.43□□□□□ -0.26
COL28A1Q2UY09 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 KIR2DL4-207ENST00000396293 715 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 AL121949.3-201ENST00000406684 385 ntBASIC13.43□□□□□ -0.26
COL28A1Q2UY09 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 AC103702.2-203ENST00000425510 379 ntTSL 5 BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 AL512599.1-201ENST00000430724 685 ntBASIC13.43□□□□□ -0.26
COL28A1Q2UY09 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 RN7SL602P-201ENST00000578326 324 ntBASIC13.43□□□□□ -0.26
COL28A1Q2UY09 KRT17P4-203ENST00000579355 621 ntTSL 3 BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 MIR4254-201ENST00000581063 76 ntBASIC13.43□□□□□ -0.26
COL28A1Q2UY09 RN7SL718P-201ENST00000581254 303 ntBASIC13.43□□□□□ -0.26
COL28A1Q2UY09 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 AL353997.6-201ENST00000583394 621 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 AC015802.1-201ENST00000588104 1449 ntBASIC13.43□□□□□ -0.26
COL28A1Q2UY09 MCM8-AS1-201ENST00000613522 983 ntTSL 2 BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 PSME2-217ENST00000615264 874 ntTSL 5 BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 AC020922.4-201ENST00000621389 339 ntBASIC13.43□□□□□ -0.26
COL28A1Q2UY09 PSME2-218ENST00000630027 185 ntTSL 3 BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 HELLS-212ENST00000630929 400 ntTSL 5 BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 MTF2-202ENST00000370303 1951 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 FUCA1P1-201ENST00000374476 1351 ntBASIC13.43□□□□□ -0.26
COL28A1Q2UY09 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
COL28A1Q2UY09 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
COL28A1Q2UY09 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL28A1Q2UY09 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
COL28A1Q2UY09 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL28A1Q2UY09 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
COL28A1Q2UY09 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL28A1Q2UY09 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC13.42□□□□□ -0.26
COL28A1Q2UY09 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL28A1Q2UY09 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
COL28A1Q2UY09 HAL-202ENST00000538703 2637 ntTSL 2 BASIC13.42□□□□□ -0.26
COL28A1Q2UY09 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
COL28A1Q2UY09 DBNDD2-207ENST00000372722 1202 ntTSL 3 BASIC13.42□□□□□ -0.26
COL28A1Q2UY09 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC13.42□□□□□ -0.26
COL28A1Q2UY09 AL157392.3-204ENST00000440878 397 ntTSL 3 BASIC13.42□□□□□ -0.26
COL28A1Q2UY09 GTF2I-203ENST00000443166 979 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
COL28A1Q2UY09 SOD2-205ENST00000444946 917 ntTSL 2 BASIC13.42□□□□□ -0.26
COL28A1Q2UY09 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC13.42□□□□□ -0.26
COL28A1Q2UY09 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC13.42□□□□□ -0.26
COL28A1Q2UY09 GPX3-202ENST00000517973 612 ntTSL 3 BASIC13.42□□□□□ -0.26
COL28A1Q2UY09 AP003351.1-201ENST00000522743 668 ntTSL 3 BASIC13.42□□□□□ -0.26
COL28A1Q2UY09 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC13.42□□□□□ -0.26
COL28A1Q2UY09 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC13.42□□□□□ -0.26
COL28A1Q2UY09 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
COL28A1Q2UY09 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL28A1Q2UY09 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL28A1Q2UY09 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL28A1Q2UY09 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
COL28A1Q2UY09 NECTIN1-203ENST00000341398 1377 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
COL28A1Q2UY09 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC13.42□□□□□ -0.26
COL28A1Q2UY09 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL28A1Q2UY09 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
COL28A1Q2UY09 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC13.42□□□□□ -0.26
COL28A1Q2UY09 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
COL28A1Q2UY09 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC13.42□□□□□ -0.26
COL28A1Q2UY09 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL28A1Q2UY09 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL28A1Q2UY09 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
COL28A1Q2UY09 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
COL28A1Q2UY09 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL28A1Q2UY09 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms