Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ZNF568-201ENST00000333987 2441 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA1P55317 ZFP1-201ENST00000332307 1502 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA1P55317 CPT1C-202ENST00000323446 2783 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA1P55317 ZWILCH-203ENST00000535141 2206 ntTSL 2 BASIC13.44□□□□□ -0.26
FOXA1P55317 IL12RB1-207ENST00000600835 2901 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA1P55317 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA1P55317 RBM4-201ENST00000310092 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA1P55317 ZFYVE19-215ENST00000570108 1669 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
FOXA1P55317 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC13.44□□□□□ -0.26
FOXA1P55317 AC040160.2-201ENST00000623816 1675 ntBASIC13.44□□□□□ -0.26
FOXA1P55317 EDN1-201ENST00000379375 2033 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA1P55317 KIF9-208ENST00000452770 2707 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA1P55317 KIFC3-211ENST00000562903 3221 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA1P55317 ZNF277-201ENST00000361822 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA1P55317 RIN2-202ENST00000440354 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA1P55317 WIZ-202ENST00000389282 4067 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA1P55317 ALG6-202ENST00000371108 3371 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA1P55317 CCDC57-202ENST00000389641 3000 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
FOXA1P55317 CCDC57-206ENST00000392347 3000 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA1P55317 COBLL1-225ENST00000629362 3868 ntAPPRIS ALT2 TSL 2 BASIC13.44□□□□□ -0.26
FOXA1P55317 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA1P55317 CT62-203ENST00000566432 2822 ntAPPRIS ALT2 TSL 2 BASIC13.44□□□□□ -0.26
FOXA1P55317 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC13.44□□□□□ -0.26
FOXA1P55317 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA1P55317 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC13.44□□□□□ -0.26
FOXA1P55317 LBH-202ENST00000401506 485 ntTSL 3 BASIC13.44□□□□□ -0.26
FOXA1P55317 TUBB2BP1-201ENST00000404155 871 ntBASIC13.44□□□□□ -0.26
FOXA1P55317 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC13.44□□□□□ -0.26
FOXA1P55317 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC13.44□□□□□ -0.26
FOXA1P55317 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC13.44□□□□□ -0.26
FOXA1P55317 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC13.44□□□□□ -0.26
FOXA1P55317 ESRRAP2-203ENST00000453309 822 ntTSL 5 BASIC13.44□□□□□ -0.26
FOXA1P55317 CD81-209ENST00000492627 886 ntTSL 3 BASIC13.44□□□□□ -0.26
FOXA1P55317 AC125604.1-201ENST00000496255 707 ntBASIC13.44□□□□□ -0.26
FOXA1P55317 AC126915.1-201ENST00000522847 1038 ntBASIC13.44□□□□□ -0.26
FOXA1P55317 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA1P55317 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC13.44□□□□□ -0.26
FOXA1P55317 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA1P55317 DIO1-215ENST00000610607 796 ntTSL 5 BASIC13.44□□□□□ -0.26
FOXA1P55317 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC13.44□□□□□ -0.26
FOXA1P55317 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC13.44□□□□□ -0.26
FOXA1P55317 TBC1D24-201ENST00000293970 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA1P55317 BDH1-202ENST00000392378 3455 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA1P55317 PARP10-203ENST00000524918 3469 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
FOXA1P55317 PPP2R2C-204ENST00000506140 1780 ntTSL 2 BASIC13.44□□□□□ -0.26
FOXA1P55317 AC015909.3-201ENST00000572855 1794 ntBASIC13.44□□□□□ -0.26
FOXA1P55317 TBKBP1-201ENST00000361722 4121 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA1P55317 CFAP65-203ENST00000409865 2769 ntAPPRIS ALT2 TSL 2 BASIC13.44□□□□□ -0.26
FOXA1P55317 HTR5A-201ENST00000287907 2912 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA1P55317 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA1P55317 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
FOXA1P55317 RNF123-203ENST00000433785 1555 ntTSL 5 BASIC13.44□□□□□ -0.26
FOXA1P55317 RBM25-204ENST00000526754 1567 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA1P55317 RASA4-203ENST00000461209 3244 ntTSL 2 BASIC13.44□□□□□ -0.26
FOXA1P55317 PPFIBP1-215ENST00000542629 3208 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA1P55317 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA1P55317 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA1P55317 SLC2A14-213ENST00000539924 1873 ntAPPRIS ALT2 TSL 2 BASIC13.44□□□□□ -0.26
FOXA1P55317 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
FOXA1P55317 LIX1L-201ENST00000604000 3975 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA1P55317 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA1P55317 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA1P55317 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA1P55317 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA1P55317 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA1P55317 GUCY1B3-204ENST00000505154 2316 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA1P55317 TMEM57-201ENST00000374343 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA1P55317 SKA3-202ENST00000314759 2919 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA1P55317 NCS1-201ENST00000372398 4991 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA1P55317 CADM1-204ENST00000536727 3520 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA1P55317 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC13.43□□□□□ -0.26
FOXA1P55317 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC13.43□□□□□ -0.26
FOXA1P55317 GDA-203ENST00000376986 1771 ntTSL 2 BASIC13.43□□□□□ -0.26
FOXA1P55317 DHX16-201ENST00000376437 1933 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA1P55317 COASY-202ENST00000421097 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA1P55317 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA1P55317 DPP8-201ENST00000300141 3139 ntAPPRIS ALT1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA1P55317 OFD1-202ENST00000380550 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA1P55317 GMIP-201ENST00000203556 3538 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA1P55317 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
FOXA1P55317 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA1P55317 KLHL8-201ENST00000273963 5621 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA1P55317 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA1P55317 CDK5RAP1-203ENST00000357886 2164 ntTSL 5 BASIC13.43□□□□□ -0.26
FOXA1P55317 NCR3-202ENST00000376071 541 ntTSL 5 BASIC13.43□□□□□ -0.26
FOXA1P55317 TGM3-201ENST00000381458 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA1P55317 OAZ3-203ENST00000453029 729 ntTSL 5 BASIC13.43□□□□□ -0.26
FOXA1P55317 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC13.43□□□□□ -0.26
FOXA1P55317 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC13.43□□□□□ -0.26
FOXA1P55317 AC090617.6-201ENST00000572790 443 ntTSL 3 BASIC13.43□□□□□ -0.26
FOXA1P55317 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA1P55317 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC13.43□□□□□ -0.26
FOXA1P55317 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC13.43□□□□□ -0.26
FOXA1P55317 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA1P55317 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA1P55317 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC13.43□□□□□ -0.26
FOXA1P55317 CRY2-202ENST00000443527 4203 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA1P55317 GPATCH2L-202ENST00000312858 2438 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
FOXA1P55317 HNF1A-201ENST00000257555 3442 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA1P55317 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 59.6 ms