Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CIITAP33076 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
CIITAP33076 AC073548.1-201ENST00000624088 1882 ntBASIC15.54■□□□□ 0.08
CIITAP33076 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CIITAP33076 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
CIITAP33076 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
CIITAP33076 FADS1-206ENST00000460649 1559 ntTSL 2 BASIC15.54■□□□□ 0.08
CIITAP33076 THPO-203ENST00000445696 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
CIITAP33076 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CIITAP33076 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
CIITAP33076 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC15.54■□□□□ 0.08
CIITAP33076 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
CIITAP33076 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CIITAP33076 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
CIITAP33076 AC010327.5-201ENST00000586923 3061 ntBASIC15.54■□□□□ 0.08
CIITAP33076 TNFSF13-203ENST00000380535 2195 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CIITAP33076 B4GALT6-201ENST00000237019 2128 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CIITAP33076 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
CIITAP33076 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
CIITAP33076 COA6-203ENST00000366615 710 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CIITAP33076 AC041040.1-201ENST00000425197 460 ntBASIC15.54■□□□□ 0.08
CIITAP33076 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC15.54■□□□□ 0.08
CIITAP33076 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC15.54■□□□□ 0.08
CIITAP33076 RPS23-207ENST00000511844 530 ntTSL 2 BASIC15.54■□□□□ 0.08
CIITAP33076 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC15.54■□□□□ 0.08
CIITAP33076 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC15.54■□□□□ 0.08
CIITAP33076 PRSS55-203ENST00000522210 1005 ntTSL 2 BASIC15.54■□□□□ 0.08
CIITAP33076 TPP1-209ENST00000528657 578 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CIITAP33076 AC074050.2-201ENST00000563338 538 ntTSL 3 BASIC15.54■□□□□ 0.08
CIITAP33076 CES1P2-201ENST00000566467 1242 ntBASIC15.54■□□□□ 0.08
CIITAP33076 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC15.54■□□□□ 0.08
CIITAP33076 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
CIITAP33076 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
CIITAP33076 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC15.54■□□□□ 0.08
CIITAP33076 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC15.54■□□□□ 0.08
CIITAP33076 NAMA-206ENST00000605377 509 ntTSL 5 BASIC15.54■□□□□ 0.08
CIITAP33076 AC012087.1-201ENST00000608068 809 ntTSL 5 BASIC15.54■□□□□ 0.08
CIITAP33076 COQ4-204ENST00000608951 781 ntTSL 2 BASIC15.54■□□□□ 0.08
CIITAP33076 AC138466.5-201ENST00000624002 808 ntBASIC15.54■□□□□ 0.08
CIITAP33076 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
CIITAP33076 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CIITAP33076 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC15.54■□□□□ 0.08
CIITAP33076 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
CIITAP33076 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
CIITAP33076 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
CIITAP33076 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC15.54■□□□□ 0.08
CIITAP33076 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CIITAP33076 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CIITAP33076 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CIITAP33076 F2-205ENST00000530231 1849 ntTSL 5 BASIC15.54■□□□□ 0.08
CIITAP33076 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CIITAP33076 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
CIITAP33076 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CIITAP33076 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CIITAP33076 LPCAT4-209ENST00000617710 1719 ntTSL 5 BASIC15.54■□□□□ 0.08
CIITAP33076 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CIITAP33076 OPN4-201ENST00000241891 2308 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CIITAP33076 NXF1-201ENST00000294172 2346 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CIITAP33076 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC15.54■□□□□ 0.08
CIITAP33076 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
CIITAP33076 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CIITAP33076 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC15.53■□□□□ 0.08
CIITAP33076 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC15.53■□□□□ 0.08
CIITAP33076 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC15.53■□□□□ 0.08
CIITAP33076 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC15.53■□□□□ 0.08
CIITAP33076 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CIITAP33076 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC15.53■□□□□ 0.08
CIITAP33076 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
CIITAP33076 LINC01285-204ENST00000634601 1947 ntTSL 5 BASIC15.53■□□□□ 0.08
CIITAP33076 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CIITAP33076 AL365181.1-201ENST00000564032 1828 ntBASIC15.53■□□□□ 0.08
CIITAP33076 BAK1P1-201ENST00000317045 636 ntBASIC15.53■□□□□ 0.08
CIITAP33076 SH3BGRL3-202ENST00000319041 768 ntTSL 2 BASIC15.53■□□□□ 0.08
CIITAP33076 SFMBT2-202ENST00000379711 692 ntTSL 5 BASIC15.53■□□□□ 0.08
CIITAP33076 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CIITAP33076 GAPDH-204ENST00000396859 1256 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CIITAP33076 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC15.53■□□□□ 0.08
CIITAP33076 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC15.53■□□□□ 0.08
CIITAP33076 BX322557.2-201ENST00000445242 379 ntTSL 3 BASIC15.53■□□□□ 0.08
CIITAP33076 C21orf62-204ENST00000490358 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CIITAP33076 LINC00634-202ENST00000505157 222 ntBASIC15.53■□□□□ 0.08
CIITAP33076 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC15.53■□□□□ 0.08
CIITAP33076 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC15.53■□□□□ 0.08
CIITAP33076 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC15.53■□□□□ 0.08
CIITAP33076 AL136982.5-201ENST00000605222 294 ntBASIC15.53■□□□□ 0.08
CIITAP33076 AP000356.3-203ENST00000614808 601 ntTSL 3 BASIC15.53■□□□□ 0.08
CIITAP33076 MIR7845-201ENST00000618396 99 ntBASIC15.53■□□□□ 0.08
CIITAP33076 IL12RB1-203ENST00000593993 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CIITAP33076 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
CIITAP33076 UGGT2-201ENST00000376712 2240 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CIITAP33076 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CIITAP33076 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CIITAP33076 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
CIITAP33076 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
CIITAP33076 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC15.53■□□□□ 0.08
CIITAP33076 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CIITAP33076 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
CIITAP33076 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CIITAP33076 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CIITAP33076 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms