Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 AC138761.6-201ENST00000583997 1423 ntBASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 AC008620.2-201ENST00000510294 1569 ntBASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 AC004899.2-201ENST00000622993 3860 ntBASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 FAM120C-202ENST00000375180 8057 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 GPRC5A-201ENST00000014914 7362 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC13.86□□□□□ -0.19
TRIM39Q9HCM9 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 LDLRAD2-201ENST00000344642 4012 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 SPATS2-223ENST00000553127 3320 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 TCAF1P1-201ENST00000414990 2232 ntBASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 AC089987.1-201ENST00000551654 2209 ntBASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 HPGD-203ENST00000422112 805 ntTSL 2 BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 MT3-203ENST00000565838 421 ntTSL 3 BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 MIR2392-201ENST00000584881 84 ntBASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 INVS-201ENST00000262456 2968 ntTSL 5 BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 TUBB4AP1-201ENST00000450755 1325 ntBASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 AC006480.2-201ENST00000609770 1337 ntBASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 KC6-207ENST00000600644 2311 ntTSL 3 BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 NHLH2-202ENST00000369506 7226 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 HECTD1-219ENST00000611816 8980 ntTSL 5 BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
TRIM39Q9HCM9 COG6-202ENST00000416691 5257 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 WASHC2C-210ENST00000623400 4616 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 SRGAP3-201ENST00000360413 8415 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 AL359881.3-201ENST00000602640 1721 ntBASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 AGAP10P-201ENST00000454844 2418 ntBASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 LAMA3-202ENST00000313654 10661 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC13.84□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms