Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC092687.3-201ENST00000606907 393 ntTSL 5 BASIC12.92□□□□□ -0.34
COL5A1P20908 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC12.92□□□□□ -0.34
COL5A1P20908 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
COL5A1P20908 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC12.92□□□□□ -0.34
COL5A1P20908 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL5A1P20908 ABR-228ENST00000574437 3196 ntTSL 5 BASIC12.92□□□□□ -0.34
COL5A1P20908 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL5A1P20908 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL5A1P20908 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
COL5A1P20908 SAP18-208ENST00000621421 2300 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL5A1P20908 USF1-202ENST00000368020 1717 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL5A1P20908 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL5A1P20908 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL5A1P20908 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL5A1P20908 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL5A1P20908 GOLGA8IP-201ENST00000340249 1899 ntTSL 2 BASIC12.91□□□□□ -0.34
COL5A1P20908 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL5A1P20908 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL5A1P20908 AL136379.1-201ENST00000623471 2642 ntBASIC12.91□□□□□ -0.34
COL5A1P20908 AC011239.2-201ENST00000624820 1489 ntBASIC12.91□□□□□ -0.34
COL5A1P20908 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL5A1P20908 OR51B5-201ENST00000300773 939 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
COL5A1P20908 RN7SKP255-201ENST00000363442 313 ntBASIC12.91□□□□□ -0.34
COL5A1P20908 RN7SKP203-201ENST00000363618 332 ntBASIC12.91□□□□□ -0.34
COL5A1P20908 RN7SKP71-201ENST00000364558 318 ntBASIC12.91□□□□□ -0.34
COL5A1P20908 7SK.1-201ENST00000365328 331 ntBASIC12.91□□□□□ -0.34
COL5A1P20908 CASP2-203ENST00000392925 616 ntTSL 3 BASIC12.91□□□□□ -0.34
COL5A1P20908 AL356653.1-201ENST00000402743 360 ntBASIC12.91□□□□□ -0.34
COL5A1P20908 CACYBPP3-201ENST00000406011 625 ntBASIC12.91□□□□□ -0.34
COL5A1P20908 C3orf84-201ENST00000432035 669 ntAPPRIS ALT1 TSL 5 BASIC12.91□□□□□ -0.34
COL5A1P20908 AC004895.1-202ENST00000435547 547 ntTSL 5 BASIC12.91□□□□□ -0.34
COL5A1P20908 TGFA-206ENST00000445399 812 ntAPPRIS ALT1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL5A1P20908 ALDOAP1-201ENST00000491506 1078 ntBASIC12.91□□□□□ -0.34
COL5A1P20908 AC022182.2-201ENST00000525556 859 ntTSL 2 BASIC12.91□□□□□ -0.34
COL5A1P20908 AP001107.9-202ENST00000531602 613 ntTSL 2 BASIC12.91□□□□□ -0.34
COL5A1P20908 MYL6-215ENST00000549566 685 ntTSL 2 BASIC12.91□□□□□ -0.34
COL5A1P20908 AL157871.1-201ENST00000555428 429 ntTSL 3 BASIC12.91□□□□□ -0.34
COL5A1P20908 AP001120.3-201ENST00000585729 489 ntBASIC12.91□□□□□ -0.34
COL5A1P20908 ACTBP9-201ENST00000587663 1099 ntBASIC12.91□□□□□ -0.34
COL5A1P20908 NF1P11-201ENST00000621292 1282 ntBASIC12.91□□□□□ -0.34
COL5A1P20908 AC010601.2-201ENST00000623060 774 ntBASIC12.91□□□□□ -0.34
COL5A1P20908 AL499606.1-201ENST00000627866 413 ntTSL 3 BASIC12.91□□□□□ -0.34
COL5A1P20908 GTF3A-209ENST00000640289 1098 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL5A1P20908 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC12.91□□□□□ -0.34
COL5A1P20908 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL5A1P20908 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC12.91□□□□□ -0.34
COL5A1P20908 AC002350.2-201ENST00000623894 1828 ntBASIC12.91□□□□□ -0.34
COL5A1P20908 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL5A1P20908 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL5A1P20908 LINC01230-201ENST00000625222 3017 ntBASIC12.91□□□□□ -0.34
COL5A1P20908 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL5A1P20908 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
COL5A1P20908 AL137077.2-201ENST00000635124 1608 ntBASIC12.91□□□□□ -0.34
COL5A1P20908 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC12.91□□□□□ -0.34
COL5A1P20908 CTSD-208ENST00000636843 1512 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
COL5A1P20908 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC12.91□□□□□ -0.34
COL5A1P20908 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
COL5A1P20908 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL5A1P20908 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC12.91□□□□□ -0.34
COL5A1P20908 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL5A1P20908 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC12.91□□□□□ -0.34
COL5A1P20908 ARF4-201ENST00000303436 1660 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL5A1P20908 HOXC4-202ENST00000430889 1666 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL5A1P20908 MCRS1-203ENST00000546244 1686 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
COL5A1P20908 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
COL5A1P20908 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL5A1P20908 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL5A1P20908 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
COL5A1P20908 MYC-206ENST00000613283 1365 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL5A1P20908 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL5A1P20908 SULT1A3-201ENST00000338971 1097 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL5A1P20908 ZNF32-AS2-201ENST00000418966 905 ntTSL 5 BASIC12.9□□□□□ -0.34
COL5A1P20908 LINC00700-202ENST00000438372 777 ntTSL 5 BASIC12.9□□□□□ -0.34
COL5A1P20908 RAI1-AS1-201ENST00000443696 724 ntTSL 5 BASIC12.9□□□□□ -0.34
COL5A1P20908 SRP9P1-201ENST00000445874 261 ntBASIC12.9□□□□□ -0.34
COL5A1P20908 RN7SL22P-201ENST00000471800 269 ntBASIC12.9□□□□□ -0.34
COL5A1P20908 RAB6B-205ENST00000486858 880 ntTSL 2 BASIC12.9□□□□□ -0.34
COL5A1P20908 IQSEC2-205ENST00000498281 673 ntTSL 3 BASIC12.9□□□□□ -0.34
COL5A1P20908 HNRNPA1P4-201ENST00000509706 756 ntBASIC12.9□□□□□ -0.34
COL5A1P20908 BACE1-207ENST00000510630 1236 ntTSL 2 BASIC12.9□□□□□ -0.34
COL5A1P20908 CTB-178M22.2-201ENST00000519795 503 ntTSL 4 BASIC12.9□□□□□ -0.34
COL5A1P20908 FAR1-IT1-201ENST00000525233 368 ntTSL 3 BASIC12.9□□□□□ -0.34
COL5A1P20908 AL512356.1-201ENST00000548203 535 ntTSL 3 BASIC12.9□□□□□ -0.34
COL5A1P20908 AC005096.1-201ENST00000560499 622 ntTSL 3 BASIC12.9□□□□□ -0.34
COL5A1P20908 RPL26-209ENST00000584164 873 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
COL5A1P20908 AC211476.2-201ENST00000608799 708 ntBASIC12.9□□□□□ -0.34
COL5A1P20908 AC099795.2-201ENST00000639582 440 ntBASIC12.9□□□□□ -0.34
COL5A1P20908 AC015813.5-201ENST00000624641 1514 ntBASIC12.9□□□□□ -0.34
COL5A1P20908 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC12.9□□□□□ -0.34
COL5A1P20908 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL5A1P20908 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL5A1P20908 KDF1-202ENST00000616918 1651 ntTSL 2 BASIC12.9□□□□□ -0.34
COL5A1P20908 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
COL5A1P20908 SP140L-205ENST00000458341 1727 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
COL5A1P20908 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC12.9□□□□□ -0.34
COL5A1P20908 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
COL5A1P20908 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL5A1P20908 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL5A1P20908 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
COL5A1P20908 GFI1B-202ENST00000372122 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms