Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AC006122.1-201ENST00000493323 440 ntBASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 BCRP6-201ENST00000510112 632 ntBASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 BCRP7-201ENST00000511549 544 ntBASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 KRT90P-201ENST00000549264 1064 ntBASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 AC190387.1-201ENST00000551683 408 ntBASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 AL355385.1-201ENST00000606123 409 ntBASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 AC244669.2-201ENST00000612320 853 ntBASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 AC010503.4-201ENST00000615487 688 ntBASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 AC015967.2-201ENST00000624092 234 ntBASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 AC006435.4-201ENST00000625037 234 ntBASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 AL356737.1-201ENST00000634391 234 ntBASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 NR4A1-201ENST00000243050 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 PASK-201ENST00000234040 4572 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 COL6A3-203ENST00000353578 9963 ntTSL 5 BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 C9orf47-203ENST00000375851 4837 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 ST3GAL2-202ENST00000393640 8872 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 METTL12-203ENST00000532971 2037 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 YLPM1-207ENST00000552421 4899 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 SGSM1-206ENST00000610372 5991 ntTSL 5 BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 GRK3-201ENST00000324198 9103 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 SLC28A1-201ENST00000286749 2636 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 SLC8A3-205ENST00000394330 2622 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 EGFR-AS1-201ENST00000442411 2806 ntTSL 2 BASIC13.59□□□□□ -0.23
CCDC28BQ9BUN5 SNED1-205ENST00000405547 7986 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.23
CCDC28BQ9BUN5 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC13.58□□□□□ -0.23
CCDC28BQ9BUN5 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC13.58□□□□□ -0.23
CCDC28BQ9BUN5 TLN2-202ENST00000472902 2116 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
CCDC28BQ9BUN5 CSF3-204ENST00000394149 1583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.23
CCDC28BQ9BUN5 AP002353.1-201ENST00000528257 1599 ntBASIC13.58□□□□□ -0.23
CCDC28BQ9BUN5 CYP4F23P-201ENST00000593402 1579 ntBASIC13.58□□□□□ -0.23
CCDC28BQ9BUN5 ZHX1-202ENST00000395571 5108 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
CCDC28BQ9BUN5 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC13.58□□□□□ -0.23
CCDC28BQ9BUN5 NCOR2-201ENST00000356219 7226 ntTSL 5 BASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 DTX1-201ENST00000257600 3455 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 SUCO-202ENST00000367723 5916 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 TMPRSS13-201ENST00000430170 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 SLC44A4-202ENST00000229729 2589 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 CEACAM20-203ENST00000614924 1809 ntAPPRIS P4 TSL 1 (best) BASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 ZMYM3-207ENST00000373998 6067 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 TRPC7-202ENST00000378459 2406 ntTSL 5 BASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 MIR661-201ENST00000384842 89 ntBASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 HNRNPA1P2-207ENST00000432375 960 ntBASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 OR2R1P-201ENST00000441404 914 ntBASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 CNN2P10-201ENST00000443067 918 ntBASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 KRT17P7-201ENST00000451704 1104 ntBASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 HOXB-AS3-209ENST00000477144 743 ntTSL 5 BASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 MIR4783-201ENST00000580343 82 ntBASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 INO80C-206ENST00000586489 594 ntTSL 3 BASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 AC015936.2-201ENST00000593177 259 ntBASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 AL022328.1-201ENST00000610050 478 ntBASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 AC139530.3-201ENST00000620344 690 ntBASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 NIT1-202ENST00000368008 2081 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 DNMT3B-205ENST00000443239 2674 ntTSL 2 BASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 UBE3A-228ENST00000638155 9131 ntAPPRIS P3 TSL 5 BASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 LAMB1-201ENST00000222399 5725 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 TJAP1-201ENST00000259751 2720 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 MCC-201ENST00000302475 8257 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 EME1-202ENST00000393271 2354 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 TMEM78-201ENST00000323223 2175 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 GOPC-202ENST00000368498 4450 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 GALC-201ENST00000261304 3883 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 TRPM4-201ENST00000252826 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 ZNF124-202ENST00000472531 2243 ntTSL 2 BASIC13.58□□□□□ -0.24
CCDC28BQ9BUN5 IFFO1-206ENST00000465801 2850 ntTSL 5 BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 UNC13D-201ENST00000207549 4393 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 ALDH9A1-201ENST00000354775 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 POTEI-203ENST00000631234 2072 ntTSL 2 BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 LINC02015-202ENST00000436078 2957 ntTSL 2 BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 ST5-256ENST00000534127 4545 ntAPPRIS P4 TSL 1 (best) BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 NCDN-201ENST00000356090 3433 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 SYTL4-201ENST00000263033 2335 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
CCDC28BQ9BUN5 PRKAR1A-203ENST00000392711 4327 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms