Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHROOM1Q2M3G4 ATF3-202ENST00000341491 2033 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHROOM1Q2M3G4 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHROOM1Q2M3G4 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
SHROOM1Q2M3G4 UBE2L5P-202ENST00000635918 1513 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
SHROOM1Q2M3G4 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 KRT8P38-201ENST00000441370 1430 ntBASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 MEG8-221ENST00000636391 2155 ntTSL 5 BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 DNAJB8-201ENST00000319153 2465 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 STAG1-206ENST00000480733 1304 ntTSL 2 BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 ETNPPL-202ENST00000411864 2028 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 FLAD1-202ENST00000295530 1211 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 ATP5S-203ENST00000358473 801 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 C6orf48-202ENST00000375635 610 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 HLA-DMA-202ENST00000395303 1007 ntBASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 C6orf48-209ENST00000395789 952 ntAPPRIS P1 TSL 3 BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 CDCA4P4-201ENST00000435216 680 ntBASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 RPSAP12-201ENST00000435879 888 ntBASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 AL662797.1-201ENST00000442852 799 ntTSL 3 BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 AL136084.1-201ENST00000449172 318 ntBASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 AL445471.1-201ENST00000456316 820 ntTSL 5 BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 AC025171.3-201ENST00000509036 472 ntTSL 2 BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 AC005845.1-201ENST00000539206 653 ntTSL 3 BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 AL139316.1-201ENST00000555643 568 ntTSL 3 BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 AL031705.1-201ENST00000566922 682 ntTSL 3 BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 MIR4746-201ENST00000579802 71 ntBASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 AC006547.3-201ENST00000600090 583 ntTSL 3 BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 CSTP2-201ENST00000610599 398 ntBASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 AL627230.2-201ENST00000613254 655 ntBASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 OR2T11-201ENST00000625105 1072 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 GSTT2-203ENST00000634759 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 DRD3-203ENST00000460779 1557 ntAPPRIS P3 TSL 2 BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 TBC1D3P2-201ENST00000339120 1513 ntTSL 2 BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 TLN2-202ENST00000472902 2116 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 NR1H4-203ENST00000392986 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 NKX2-1-AS1-201ENST00000521292 1775 ntTSL 2 BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHROOM1Q2M3G4 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
SHROOM1Q2M3G4 BCCIP-203ENST00000368759 1433 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SHROOM1Q2M3G4 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SHROOM1Q2M3G4 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
SHROOM1Q2M3G4 ZFYVE19-215ENST00000570108 1669 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
SHROOM1Q2M3G4 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC16.02■□□□□ 0.16
SHROOM1Q2M3G4 ALPL-206ENST00000539907 2241 ntTSL 2 BASIC16.02■□□□□ 0.16
SHROOM1Q2M3G4 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SHROOM1Q2M3G4 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SHROOM1Q2M3G4 NUDT2-203ENST00000379158 1075 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
SHROOM1Q2M3G4 MPV17-209ENST00000405983 859 ntTSL 5 BASIC16.02■□□□□ 0.16
SHROOM1Q2M3G4 SLC12A9-AS1-201ENST00000412754 369 ntTSL 3 BASIC16.02■□□□□ 0.16
SHROOM1Q2M3G4 ELFN1-AS1-201ENST00000415399 636 ntTSL 5 BASIC16.02■□□□□ 0.16
SHROOM1Q2M3G4 NME6-208ENST00000435684 599 ntTSL 2 BASIC16.02■□□□□ 0.16
SHROOM1Q2M3G4 AK2P2-201ENST00000439142 405 ntBASIC16.02■□□□□ 0.16
SHROOM1Q2M3G4 AL512288.1-201ENST00000448015 491 ntTSL 5 BASIC16.02■□□□□ 0.16
SHROOM1Q2M3G4 AL451000.1-201ENST00000451300 1186 ntBASIC16.02■□□□□ 0.16
SHROOM1Q2M3G4 CITED1-209ENST00000453707 998 ntAPPRIS ALT2 TSL 3 BASIC16.02■□□□□ 0.16
SHROOM1Q2M3G4 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC16.02■□□□□ 0.16
SHROOM1Q2M3G4 ZNF576-205ENST00000529930 830 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
SHROOM1Q2M3G4 SRP54-AS1-204ENST00000556705 580 ntTSL 2 BASIC16.02■□□□□ 0.16
SHROOM1Q2M3G4 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC16.02■□□□□ 0.16
SHROOM1Q2M3G4 AC018845.3-201ENST00000562536 516 ntTSL 3 BASIC16.02■□□□□ 0.16
SHROOM1Q2M3G4 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC16.02■□□□□ 0.16
SHROOM1Q2M3G4 GSTT2-202ENST00000621118 1112 ntTSL 5 BASIC16.02■□□□□ 0.16
SHROOM1Q2M3G4 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC16.02■□□□□ 0.16
SHROOM1Q2M3G4 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SHROOM1Q2M3G4 EFHB-202ENST00000344838 2389 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.15
SHROOM1Q2M3G4 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
SHROOM1Q2M3G4 C1R-202ENST00000536053 2347 ntTSL 2 BASIC16.02■□□□□ 0.15
SHROOM1Q2M3G4 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SHROOM1Q2M3G4 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SHROOM1Q2M3G4 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SHROOM1Q2M3G4 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC16.02■□□□□ 0.15
SHROOM1Q2M3G4 ADGRG3-201ENST00000333493 2728 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
SHROOM1Q2M3G4 CAMKK2-204ENST00000392473 2967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
SHROOM1Q2M3G4 SETMAR-205ENST00000425863 1657 ntTSL 2 BASIC16.02■□□□□ 0.15
SHROOM1Q2M3G4 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
SHROOM1Q2M3G4 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC16.02■□□□□ 0.15
SHROOM1Q2M3G4 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHROOM1Q2M3G4 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC16.01■□□□□ 0.15
SHROOM1Q2M3G4 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SHROOM1Q2M3G4 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
SHROOM1Q2M3G4 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 73.1 ms