Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC12.84□□□□□ -0.35
RFC3P40938 RET-205ENST00000615310 4337 ntTSL 5 BASIC12.84□□□□□ -0.35
RFC3P40938 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
RFC3P40938 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.35
RFC3P40938 FUT3-201ENST00000303225 2584 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
RFC3P40938 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC12.83□□□□□ -0.35
RFC3P40938 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
RFC3P40938 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC12.83□□□□□ -0.35
RFC3P40938 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.35
RFC3P40938 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
RFC3P40938 AC090502.4-201ENST00000551714 1386 ntBASIC12.83□□□□□ -0.36
RFC3P40938 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
RFC3P40938 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
RFC3P40938 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
RFC3P40938 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
RFC3P40938 PCDHB5-201ENST00000231134 3408 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
RFC3P40938 C17orf80-202ENST00000268942 3449 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
RFC3P40938 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC12.83□□□□□ -0.36
RFC3P40938 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC12.83□□□□□ -0.36
RFC3P40938 AC025271.4-201ENST00000621477 1726 ntBASIC12.83□□□□□ -0.36
RFC3P40938 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC12.83□□□□□ -0.36
RFC3P40938 TOE1-201ENST00000372090 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
RFC3P40938 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC12.83□□□□□ -0.36
RFC3P40938 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
RFC3P40938 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
RFC3P40938 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
RFC3P40938 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
RFC3P40938 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
RFC3P40938 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
RFC3P40938 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
RFC3P40938 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
RFC3P40938 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
RFC3P40938 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
RFC3P40938 BX679664.3-201ENST00000414070 555 ntBASIC12.83□□□□□ -0.36
RFC3P40938 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC12.83□□□□□ -0.36
RFC3P40938 PIN4P1-201ENST00000451079 396 ntBASIC12.83□□□□□ -0.36
RFC3P40938 AC113935.1-201ENST00000471722 555 ntBASIC12.83□□□□□ -0.36
RFC3P40938 RN7SL564P-201ENST00000496309 250 ntBASIC12.83□□□□□ -0.36
RFC3P40938 CHCHD2P2-201ENST00000503744 321 ntBASIC12.83□□□□□ -0.36
RFC3P40938 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC12.83□□□□□ -0.36
RFC3P40938 SLC25A15P3-201ENST00000505530 290 ntBASIC12.83□□□□□ -0.36
RFC3P40938 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC12.83□□□□□ -0.36
RFC3P40938 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC12.83□□□□□ -0.36
RFC3P40938 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC12.83□□□□□ -0.36
RFC3P40938 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC12.83□□□□□ -0.36
RFC3P40938 AC007952.4-201ENST00000573866 637 ntBASIC12.83□□□□□ -0.36
RFC3P40938 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC12.83□□□□□ -0.36
RFC3P40938 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC12.83□□□□□ -0.36
RFC3P40938 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC12.83□□□□□ -0.36
RFC3P40938 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
RFC3P40938 RN7SL357P-201ENST00000581065 298 ntBASIC12.83□□□□□ -0.36
RFC3P40938 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC12.83□□□□□ -0.36
RFC3P40938 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC12.83□□□□□ -0.36
RFC3P40938 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
RFC3P40938 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC12.83□□□□□ -0.36
RFC3P40938 GMFG-209ENST00000600322 622 ntTSL 5 BASIC12.83□□□□□ -0.36
RFC3P40938 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
RFC3P40938 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
RFC3P40938 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
RFC3P40938 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
RFC3P40938 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
RFC3P40938 SLC22A2-202ENST00000366953 2597 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
RFC3P40938 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
RFC3P40938 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
RFC3P40938 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
RFC3P40938 TNPO2-218ENST00000592287 2914 ntAPPRIS P4 TSL 1 (best) BASIC12.83□□□□□ -0.36
RFC3P40938 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
RFC3P40938 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC12.83□□□□□ -0.36
RFC3P40938 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
RFC3P40938 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
RFC3P40938 NUTM2HP-201ENST00000442076 2498 ntBASIC12.83□□□□□ -0.36
RFC3P40938 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
RFC3P40938 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
RFC3P40938 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
RFC3P40938 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
RFC3P40938 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
RFC3P40938 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
RFC3P40938 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
RFC3P40938 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
RFC3P40938 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
RFC3P40938 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
RFC3P40938 STRA6-203ENST00000416286 2750 ntTSL 5 BASIC12.82□□□□□ -0.36
RFC3P40938 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC12.82□□□□□ -0.36
RFC3P40938 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
RFC3P40938 PGAM1P5-202ENST00000552554 2148 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
RFC3P40938 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC12.82□□□□□ -0.36
RFC3P40938 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
RFC3P40938 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
RFC3P40938 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC12.82□□□□□ -0.36
RFC3P40938 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
RFC3P40938 USP39-220ENST00000613444 2161 ntTSL 2 BASIC12.82□□□□□ -0.36
RFC3P40938 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC12.82□□□□□ -0.36
RFC3P40938 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
RFC3P40938 USP17L6P-201ENST00000382470 1197 ntBASIC12.82□□□□□ -0.36
RFC3P40938 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
RFC3P40938 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC12.82□□□□□ -0.36
RFC3P40938 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC12.82□□□□□ -0.36
RFC3P40938 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
RFC3P40938 BUD31-205ENST00000456893 512 ntTSL 5 BASIC12.82□□□□□ -0.36
RFC3P40938 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC12.82□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms