Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 NAA38-204ENST00000575208 529 ntTSL 3 BASIC15.84■□□□□ 0.13
SMARCA1P28370 MBP-238ENST00000580402 915 ntTSL 5 BASIC15.84■□□□□ 0.13
SMARCA1P28370 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC15.84■□□□□ 0.13
SMARCA1P28370 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC15.84■□□□□ 0.13
SMARCA1P28370 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC15.84■□□□□ 0.13
SMARCA1P28370 GMFG-209ENST00000600322 622 ntTSL 5 BASIC15.84■□□□□ 0.13
SMARCA1P28370 PPIA-210ENST00000620047 827 ntTSL 5 BASIC15.84■□□□□ 0.13
SMARCA1P28370 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
SMARCA1P28370 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SMARCA1P28370 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SMARCA1P28370 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC15.84■□□□□ 0.13
SMARCA1P28370 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SMARCA1P28370 IFT172-202ENST00000359466 2207 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SMARCA1P28370 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC15.84■□□□□ 0.13
SMARCA1P28370 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC15.84■□□□□ 0.13
SMARCA1P28370 DAB1-207ENST00000420954 1817 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SMARCA1P28370 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
SMARCA1P28370 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC15.84■□□□□ 0.13
SMARCA1P28370 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SMARCA1P28370 TMEM56-RWDD3-202ENST00000604534 1491 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
SMARCA1P28370 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
SMARCA1P28370 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC15.84■□□□□ 0.13
SMARCA1P28370 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC15.84■□□□□ 0.13
SMARCA1P28370 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SMARCA1P28370 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SMARCA1P28370 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
SMARCA1P28370 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.13
SMARCA1P28370 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
SMARCA1P28370 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
SMARCA1P28370 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
SMARCA1P28370 PHF10-206ENST00000621772 1651 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
SMARCA1P28370 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC15.83■□□□□ 0.13
SMARCA1P28370 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC15.83■□□□□ 0.13
SMARCA1P28370 LPCAT4-209ENST00000617710 1719 ntTSL 5 BASIC15.83■□□□□ 0.13
SMARCA1P28370 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
SMARCA1P28370 AGAP12P-201ENST00000585227 2359 ntBASIC15.83■□□□□ 0.12
SMARCA1P28370 SNRNP27-201ENST00000244227 1802 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SMARCA1P28370 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SMARCA1P28370 TESPA1-201ENST00000316577 1898 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
SMARCA1P28370 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
SMARCA1P28370 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SMARCA1P28370 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC15.83■□□□□ 0.12
SMARCA1P28370 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC15.83■□□□□ 0.12
SMARCA1P28370 AC103563.1-201ENST00000429316 123 ntBASIC15.83■□□□□ 0.12
SMARCA1P28370 BX322557.2-201ENST00000445242 379 ntTSL 3 BASIC15.83■□□□□ 0.12
SMARCA1P28370 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC15.83■□□□□ 0.12
SMARCA1P28370 GULOP-201ENST00000454030 748 ntBASIC15.83■□□□□ 0.12
SMARCA1P28370 AL390961.2-201ENST00000454991 472 ntTSL 3 BASIC15.83■□□□□ 0.12
SMARCA1P28370 FXYD6-202ENST00000524656 1033 ntAPPRIS P2 TSL 3 BASIC15.83■□□□□ 0.12
SMARCA1P28370 CFL1-206ENST00000527344 962 ntTSL 2 BASIC15.83■□□□□ 0.12
SMARCA1P28370 EHF-208ENST00000530286 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SMARCA1P28370 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC15.83■□□□□ 0.12
SMARCA1P28370 NAMA-206ENST00000605377 509 ntTSL 5 BASIC15.83■□□□□ 0.12
SMARCA1P28370 LINC01869-204ENST00000635639 1047 ntTSL 5 BASIC15.83■□□□□ 0.12
SMARCA1P28370 ARHGAP23P1-201ENST00000562773 1937 ntBASIC15.83■□□□□ 0.12
SMARCA1P28370 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC15.83■□□□□ 0.12
SMARCA1P28370 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
SMARCA1P28370 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SMARCA1P28370 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SMARCA1P28370 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
SMARCA1P28370 RNASE7-201ENST00000298690 1498 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SMARCA1P28370 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC15.83■□□□□ 0.12
SMARCA1P28370 AC010327.5-201ENST00000586923 3061 ntBASIC15.83■□□□□ 0.12
SMARCA1P28370 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC15.83■□□□□ 0.12
SMARCA1P28370 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SMARCA1P28370 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC15.83■□□□□ 0.12
SMARCA1P28370 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SMARCA1P28370 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
SMARCA1P28370 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SMARCA1P28370 NUP62CL-201ENST00000372466 1755 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SMARCA1P28370 PPP2R2C-204ENST00000506140 1780 ntTSL 2 BASIC15.82■□□□□ 0.12
SMARCA1P28370 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SMARCA1P28370 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
SMARCA1P28370 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC15.82■□□□□ 0.12
SMARCA1P28370 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SMARCA1P28370 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SMARCA1P28370 APCDD1L-AS1-203ENST00000427140 2092 ntTSL 2 BASIC15.82■□□□□ 0.12
SMARCA1P28370 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SMARCA1P28370 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
SMARCA1P28370 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SMARCA1P28370 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
SMARCA1P28370 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SMARCA1P28370 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC15.82■□□□□ 0.12
SMARCA1P28370 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SMARCA1P28370 ATP5C1-201ENST00000335698 1078 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
SMARCA1P28370 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC15.82■□□□□ 0.12
SMARCA1P28370 SNU13-204ENST00000402458 462 ntTSL 3 BASIC15.82■□□□□ 0.12
SMARCA1P28370 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SMARCA1P28370 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC15.82■□□□□ 0.12
SMARCA1P28370 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC15.82■□□□□ 0.12
SMARCA1P28370 AL161733.1-201ENST00000421067 462 ntTSL 3 BASIC15.82■□□□□ 0.12
SMARCA1P28370 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC15.82■□□□□ 0.12
SMARCA1P28370 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
SMARCA1P28370 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC15.82■□□□□ 0.12
SMARCA1P28370 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC15.82■□□□□ 0.12
SMARCA1P28370 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SMARCA1P28370 KRT8P42-201ENST00000405771 1399 ntBASIC15.82■□□□□ 0.12
SMARCA1P28370 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC15.82■□□□□ 0.12
SMARCA1P28370 IL12RB1-203ENST00000593993 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SMARCA1P28370 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms