Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
PCNAP12004 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC13.67□□□□□ -0.22
PCNAP12004 CSH2-202ENST00000345366 598 ntTSL 5 BASIC13.67□□□□□ -0.22
PCNAP12004 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PCNAP12004 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PCNAP12004 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PCNAP12004 MIR1908-201ENST00000410394 80 ntBASIC13.67□□□□□ -0.22
PCNAP12004 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC13.67□□□□□ -0.22
PCNAP12004 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC13.67□□□□□ -0.22
PCNAP12004 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PCNAP12004 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PCNAP12004 CSH2-206ENST00000560142 749 ntTSL 5 BASIC13.67□□□□□ -0.22
PCNAP12004 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC13.67□□□□□ -0.22
PCNAP12004 SKA2-205ENST00000580541 689 ntTSL 3 BASIC13.67□□□□□ -0.22
PCNAP12004 KRT18P8-201ENST00000581937 1246 ntBASIC13.67□□□□□ -0.22
PCNAP12004 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC13.67□□□□□ -0.22
PCNAP12004 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC13.67□□□□□ -0.22
PCNAP12004 CNP-202ENST00000393892 5217 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PCNAP12004 AMOTL2-202ENST00000422605 4335 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
PCNAP12004 SON-203ENST00000381679 7860 ntTSL 5 BASIC13.67□□□□□ -0.22
PCNAP12004 USP49-201ENST00000373006 3177 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PCNAP12004 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
PCNAP12004 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
PCNAP12004 RPS6KA2-204ENST00000481261 2297 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PCNAP12004 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC13.67□□□□□ -0.22
PCNAP12004 PCDHGB7-202ENST00000612073 2785 ntAPPRIS ALT2 BASIC13.67□□□□□ -0.22
PCNAP12004 CDIP1-201ENST00000399599 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PCNAP12004 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PCNAP12004 RAB15-201ENST00000267512 3391 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PCNAP12004 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PCNAP12004 NR3C2-209ENST00000625323 5909 ntTSL 5 BASIC13.67□□□□□ -0.22
PCNAP12004 LSM14A-203ENST00000544216 3596 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
PCNAP12004 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC13.67□□□□□ -0.22
PCNAP12004 TMC8-201ENST00000318430 4411 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
PCNAP12004 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PCNAP12004 DAAM2-202ENST00000398904 6224 ntAPPRIS ALT1 TSL 5 BASIC13.67□□□□□ -0.22
PCNAP12004 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PCNAP12004 PIK3R5-216ENST00000584803 2653 ntAPPRIS ALT1 TSL 5 BASIC13.67□□□□□ -0.22
PCNAP12004 C6orf62-202ENST00000378119 4134 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
PCNAP12004 DRD2-201ENST00000346454 2433 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
PCNAP12004 BEND3P3-201ENST00000611030 2440 ntBASIC13.66□□□□□ -0.22
PCNAP12004 TRIM4-201ENST00000349062 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
PCNAP12004 MYO16-205ENST00000457511 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
PCNAP12004 CCT2-201ENST00000299300 2041 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
PCNAP12004 ERVK13-1-207ENST00000569465 3321 ntTSL 2 BASIC13.66□□□□□ -0.22
PCNAP12004 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC13.66□□□□□ -0.22
PCNAP12004 ADGRG6-204ENST00000367609 6887 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
PCNAP12004 TOLLIP-203ENST00000525159 3429 ntTSL 2 BASIC13.66□□□□□ -0.22
PCNAP12004 LINC00567-201ENST00000569854 3409 ntBASIC13.66□□□□□ -0.22
PCNAP12004 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
PCNAP12004 DYNC1I1-202ENST00000359388 2843 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
PCNAP12004 GPR61-204ENST00000527748 4921 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
PCNAP12004 NCF2-201ENST00000367535 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
PCNAP12004 SLC1A1-201ENST00000262352 3722 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
PCNAP12004 MYOM3-201ENST00000338909 2693 ntTSL 2 BASIC13.66□□□□□ -0.22
PCNAP12004 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
PCNAP12004 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC13.66□□□□□ -0.22
PCNAP12004 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
PCNAP12004 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC13.66□□□□□ -0.22
PCNAP12004 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC13.66□□□□□ -0.22
PCNAP12004 NKAIN1P1-201ENST00000435754 582 ntBASIC13.66□□□□□ -0.22
PCNAP12004 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC13.66□□□□□ -0.22
PCNAP12004 AC108725.1-201ENST00000495472 409 ntBASIC13.66□□□□□ -0.22
PCNAP12004 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC13.66□□□□□ -0.22
PCNAP12004 AC022182.2-201ENST00000525556 859 ntTSL 2 BASIC13.66□□□□□ -0.22
PCNAP12004 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC13.66□□□□□ -0.22
PCNAP12004 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
PCNAP12004 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC13.66□□□□□ -0.22
PCNAP12004 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC13.66□□□□□ -0.22
PCNAP12004 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC13.66□□□□□ -0.22
PCNAP12004 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC13.66□□□□□ -0.22
PCNAP12004 GRM1-204ENST00000492807 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
PCNAP12004 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
PCNAP12004 APCDD1L-AS1-203ENST00000427140 2092 ntTSL 2 BASIC13.66□□□□□ -0.22
PCNAP12004 UBFD1-207ENST00000567212 4727 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
PCNAP12004 OSBPL2-201ENST00000313733 4009 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
PCNAP12004 CELSR1-201ENST00000262738 11389 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
PCNAP12004 HINT3-201ENST00000229633 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
PCNAP12004 SLC35F2-203ENST00000525071 3331 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
PCNAP12004 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
PCNAP12004 RIMS1-218ENST00000522291 3876 ntTSL 5 BASIC13.66□□□□□ -0.22
PCNAP12004 PCDHA2-202ENST00000520672 3056 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
PCNAP12004 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
PCNAP12004 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
PCNAP12004 RCC2P1-201ENST00000452257 1476 ntBASIC13.66□□□□□ -0.22
PCNAP12004 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC13.66□□□□□ -0.22
PCNAP12004 ZNF384-201ENST00000319770 3266 ntTSL 2 BASIC13.66□□□□□ -0.22
PCNAP12004 NIN-206ENST00000453196 6785 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
PCNAP12004 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
PCNAP12004 TESMIN-204ENST00000443940 3495 ntTSL 2 BASIC13.66□□□□□ -0.22
PCNAP12004 MIRLET7BHG-201ENST00000360737 4560 ntTSL 2 BASIC13.66□□□□□ -0.22
PCNAP12004 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC13.66□□□□□ -0.22
PCNAP12004 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
PCNAP12004 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
PCNAP12004 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC13.65□□□□□ -0.22
PCNAP12004 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
PCNAP12004 GPR35-205ENST00000438013 3821 ntAPPRIS P3 BASIC13.65□□□□□ -0.22
PCNAP12004 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC13.65□□□□□ -0.22
PCNAP12004 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC13.65□□□□□ -0.22
PCNAP12004 BRSK2-202ENST00000382179 3576 ntTSL 2 BASIC13.65□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms