Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RHEB-207ENST00000496004 744 ntTSL 2 BASIC13.5□□□□□ -0.25
FOXA1P55317 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC13.5□□□□□ -0.25
FOXA1P55317 RCC2P8-201ENST00000502779 1035 ntBASIC13.5□□□□□ -0.25
FOXA1P55317 MIR3188-201ENST00000583494 85 ntBASIC13.5□□□□□ -0.25
FOXA1P55317 AL356740.1-201ENST00000602192 1297 ntBASIC13.5□□□□□ -0.25
FOXA1P55317 PRKN-211ENST00000615065 261 ntTSL 5 BASIC13.5□□□□□ -0.25
FOXA1P55317 AL136295.7-201ENST00000619226 1200 ntBASIC13.5□□□□□ -0.25
FOXA1P55317 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC13.5□□□□□ -0.25
FOXA1P55317 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA1P55317 AC245140.2-201ENST00000624054 1939 ntBASIC13.5□□□□□ -0.25
FOXA1P55317 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA1P55317 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA1P55317 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA1P55317 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA1P55317 ZFYVE19-202ENST00000336455 1784 ntTSL 2 BASIC13.5□□□□□ -0.25
FOXA1P55317 RIMS1-218ENST00000522291 3876 ntTSL 5 BASIC13.5□□□□□ -0.25
FOXA1P55317 DDC-204ENST00000426377 1700 ntTSL 3 BASIC13.5□□□□□ -0.25
FOXA1P55317 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC13.5□□□□□ -0.25
FOXA1P55317 SRPRA-201ENST00000332118 3069 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA1P55317 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
FOXA1P55317 GSE1-203ENST00000405402 4366 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA1P55317 DDX19B-202ENST00000355992 1692 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA1P55317 DKFZP434A062-201ENST00000573103 5021 ntBASIC13.5□□□□□ -0.25
FOXA1P55317 COL16A1-202ENST00000373668 3643 ntTSL 2 BASIC13.5□□□□□ -0.25
FOXA1P55317 KDELR1-201ENST00000330720 1557 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA1P55317 FAM201A-201ENST00000377680 3437 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA1P55317 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
FOXA1P55317 AGGF1P10-201ENST00000635005 2191 ntBASIC13.49□□□□□ -0.25
FOXA1P55317 Z98257.2-202ENST00000641138 1548 ntBASIC13.49□□□□□ -0.25
FOXA1P55317 ATG5-202ENST00000360666 2712 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA1P55317 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA1P55317 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA1P55317 KIAA1683-201ENST00000392413 4402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA1P55317 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC13.49□□□□□ -0.25
FOXA1P55317 ATF3-202ENST00000341491 2033 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA1P55317 METTL12-203ENST00000532971 2037 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
FOXA1P55317 FAM71E2-201ENST00000424985 3191 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
FOXA1P55317 SLC1A1-201ENST00000262352 3722 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA1P55317 TFR2-205ENST00000462107 3131 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
FOXA1P55317 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA1P55317 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA1P55317 LPO-201ENST00000262290 2979 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA1P55317 STXBP6-202ENST00000396700 4021 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA1P55317 MATN1-AS1-201ENST00000414532 3925 ntTSL 2 BASIC13.49□□□□□ -0.25
FOXA1P55317 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA1P55317 AC019205.2-203ENST00000421315 3362 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA1P55317 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA1P55317 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA1P55317 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC13.49□□□□□ -0.25
FOXA1P55317 ALKBH2-203ENST00000440112 574 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA1P55317 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA1P55317 SERPINA13P-202ENST00000478994 924 ntBASIC13.49□□□□□ -0.25
FOXA1P55317 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC13.49□□□□□ -0.25
FOXA1P55317 AL583810.1-201ENST00000553344 1045 ntBASIC13.49□□□□□ -0.25
FOXA1P55317 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC13.49□□□□□ -0.25
FOXA1P55317 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC13.49□□□□□ -0.25
FOXA1P55317 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
FOXA1P55317 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
FOXA1P55317 AC017083.2-201ENST00000608069 979 ntBASIC13.49□□□□□ -0.25
FOXA1P55317 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA1P55317 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
FOXA1P55317 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA1P55317 RBM15-204ENST00000617047 3284 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA1P55317 SRRM1-201ENST00000323848 4011 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA1P55317 ALKBH1-201ENST00000216489 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA1P55317 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA1P55317 GGA1-201ENST00000325180 2528 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA1P55317 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA1P55317 NLRP2-204ENST00000391721 3420 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
FOXA1P55317 DRD2-210ENST00000544518 2473 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA1P55317 SYDE1-201ENST00000342784 3264 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
FOXA1P55317 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC13.49□□□□□ -0.25
FOXA1P55317 KRT8P21-201ENST00000430398 1491 ntBASIC13.48□□□□□ -0.25
FOXA1P55317 DHX30-201ENST00000348968 3994 ntTSL 5 BASIC13.48□□□□□ -0.25
FOXA1P55317 IFT81-201ENST00000242591 3108 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA1P55317 FGF10-AS1-201ENST00000502457 1894 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA1P55317 ZNF843-202ENST00000564218 3816 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
FOXA1P55317 TNFSF13-203ENST00000380535 2195 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA1P55317 AC008040.5-201ENST00000599781 1781 ntBASIC13.48□□□□□ -0.25
FOXA1P55317 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC13.48□□□□□ -0.25
FOXA1P55317 NF1-204ENST00000431387 2889 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA1P55317 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA1P55317 MAP2K3-203ENST00000361818 2034 ntTSL 5 BASIC13.48□□□□□ -0.25
FOXA1P55317 ELN-211ENST00000414324 3139 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
FOXA1P55317 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA1P55317 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC13.48□□□□□ -0.25
FOXA1P55317 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC13.48□□□□□ -0.25
FOXA1P55317 KRTAP10-13P-201ENST00000412914 571 ntBASIC13.48□□□□□ -0.25
FOXA1P55317 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC13.48□□□□□ -0.25
FOXA1P55317 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC13.48□□□□□ -0.25
FOXA1P55317 APOA2-204ENST00000464492 530 ntTSL 3 BASIC13.48□□□□□ -0.25
FOXA1P55317 AC106794.1-201ENST00000506935 792 ntBASIC13.48□□□□□ -0.25
FOXA1P55317 MARK2P5-201ENST00000507649 634 ntBASIC13.48□□□□□ -0.25
FOXA1P55317 ALG1L13P-202ENST00000519320 584 ntBASIC13.48□□□□□ -0.25
FOXA1P55317 AC044849.1-201ENST00000519737 1188 ntBASIC13.48□□□□□ -0.25
FOXA1P55317 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC13.48□□□□□ -0.25
FOXA1P55317 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC13.48□□□□□ -0.25
FOXA1P55317 AC013355.1-201ENST00000562625 723 ntBASIC13.48□□□□□ -0.25
FOXA1P55317 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC13.48□□□□□ -0.25
FOXA1P55317 ELP5-212ENST00000574255 671 ntTSL 2 BASIC13.48□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms