Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 SNU13-201ENST00000215956 1630 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HTTP42858 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
HTTP42858 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
HTTP42858 TSACC-203ENST00000368253 512 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HTTP42858 NRSN1-201ENST00000378475 800 ntTSL 3 BASIC14.95□□□□□ -0.02
HTTP42858 AL356583.3-201ENST00000412354 417 ntBASIC14.95□□□□□ -0.02
HTTP42858 H1FOO-202ENST00000503977 881 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
HTTP42858 SPATA24-204ENST00000507779 606 ntTSL 5 BASIC14.95□□□□□ -0.02
HTTP42858 MT1G-204ENST00000569500 305 ntTSL 3 BASIC14.95□□□□□ -0.02
HTTP42858 AC025682.1-203ENST00000584391 442 ntTSL 2 BASIC14.95□□□□□ -0.02
HTTP42858 AL136115.2-201ENST00000602889 587 ntTSL 5 BASIC14.95□□□□□ -0.02
HTTP42858 AC097634.2-201ENST00000615819 604 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
HTTP42858 AC016526.4-201ENST00000636059 517 ntTSL 3 BASIC14.95□□□□□ -0.02
HTTP42858 EPM2A-214ENST00000638783 801 ntTSL 5 BASIC14.95□□□□□ -0.02
HTTP42858 EPM2A-229ENST00000640980 647 ntTSL 3 BASIC14.95□□□□□ -0.02
HTTP42858 IKZF3-211ENST00000394189 1552 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
HTTP42858 Z98885.2-201ENST00000565177 1567 ntTSL 2 BASIC14.95□□□□□ -0.02
HTTP42858 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC14.95□□□□□ -0.02
HTTP42858 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HTTP42858 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HTTP42858 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HTTP42858 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
HTTP42858 ANKDD1A-207ENST00000496660 1477 ntTSL 2 BASIC14.95□□□□□ -0.02
HTTP42858 ACKR1-202ENST00000368122 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HTTP42858 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HTTP42858 DDX46-212ENST00000628477 1584 ntTSL 5 BASIC14.95□□□□□ -0.02
HTTP42858 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
HTTP42858 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HTTP42858 RN7SL16P-201ENST00000476316 269 ntBASIC14.95□□□□□ -0.02
HTTP42858 AP005264.6-203ENST00000586882 1050 ntTSL 5 BASIC14.95□□□□□ -0.02
HTTP42858 AC025165.4-201ENST00000602327 433 ntBASIC14.95□□□□□ -0.02
HTTP42858 Metazoa_SRP.97-201ENST00000618280 304 ntBASIC14.95□□□□□ -0.02
HTTP42858 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC14.94□□□□□ -0.02
HTTP42858 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC14.94□□□□□ -0.02
HTTP42858 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
HTTP42858 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HTTP42858 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HTTP42858 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
HTTP42858 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC14.94□□□□□ -0.02
HTTP42858 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
HTTP42858 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
HTTP42858 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
HTTP42858 LINC01535-206ENST00000592712 1699 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
HTTP42858 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HTTP42858 FXYD2-201ENST00000260287 513 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HTTP42858 GLIPR2-201ENST00000377959 812 ntTSL 3 BASIC14.94□□□□□ -0.02
HTTP42858 AC004884.1-201ENST00000393647 319 ntBASIC14.94□□□□□ -0.02
HTTP42858 LINC01297-202ENST00000453395 624 ntTSL 5 BASIC14.94□□□□□ -0.02
HTTP42858 DNM1P17-201ENST00000512082 426 ntBASIC14.94□□□□□ -0.02
HTTP42858 ALG1L14P-201ENST00000514230 434 ntBASIC14.94□□□□□ -0.02
HTTP42858 IGHVII-33-1-201ENST00000524010 280 ntBASIC14.94□□□□□ -0.02
HTTP42858 MRPL34-206ENST00000602206 603 ntTSL 3 BASIC14.94□□□□□ -0.02
HTTP42858 USP44-202ENST00000393091 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HTTP42858 TRNT1-202ENST00000280591 2180 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
HTTP42858 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
HTTP42858 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
HTTP42858 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
HTTP42858 GOSR2-233ENST00000640068 3103 ntTSL 5 BASIC14.94□□□□□ -0.02
HTTP42858 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HTTP42858 TEDDM2P-201ENST00000414169 786 ntBASIC14.94□□□□□ -0.02
HTTP42858 AC109830.1-203ENST00000506638 467 ntTSL 2 BASIC14.94□□□□□ -0.02
HTTP42858 NR2F2-AS1-210ENST00000561344 966 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
HTTP42858 RN7SL624P-201ENST00000580297 278 ntBASIC14.94□□□□□ -0.02
HTTP42858 PUDPP2-202ENST00000628080 737 ntTSL 5 BASIC14.94□□□□□ -0.02
HTTP42858 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
HTTP42858 SIRPG-205ENST00000381583 1383 ntTSL 5 BASIC14.94□□□□□ -0.02
HTTP42858 ST3GAL3-202ENST00000330208 1479 ntTSL 5 BASIC14.94□□□□□ -0.02
HTTP42858 ERG-211ENST00000453032 1595 ntTSL 2 BASIC14.94□□□□□ -0.02
HTTP42858 ARF4-201ENST00000303436 1660 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HTTP42858 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HTTP42858 AMHR2-204ENST00000550311 1787 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
HTTP42858 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
HTTP42858 AC073585.1-201ENST00000368895 1328 ntBASIC14.93□□□□□ -0.02
HTTP42858 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC14.93□□□□□ -0.02
HTTP42858 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC14.93□□□□□ -0.02
HTTP42858 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
HTTP42858 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HTTP42858 SCGB1C1-201ENST00000342878 431 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HTTP42858 FTH1P19-201ENST00000402402 528 ntBASIC14.93□□□□□ -0.02
HTTP42858 PFN1P10-201ENST00000455962 327 ntBASIC14.93□□□□□ -0.02
HTTP42858 RN7SL341P-201ENST00000613745 298 ntBASIC14.93□□□□□ -0.02
HTTP42858 DDX31-202ENST00000372153 3285 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
HTTP42858 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
HTTP42858 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HTTP42858 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HTTP42858 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
HTTP42858 TCP1-215ENST00000544255 1403 ntTSL 5 BASIC14.93□□□□□ -0.02
HTTP42858 DDC-213ENST00000617822 1809 ntTSL 3 BASIC14.93□□□□□ -0.02
HTTP42858 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC14.93□□□□□ -0.02
HTTP42858 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
HTTP42858 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
HTTP42858 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HTTP42858 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
HTTP42858 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HTTP42858 LIMS2-203ENST00000409254 867 ntTSL 3 BASIC14.93□□□□□ -0.02
HTTP42858 GAPDHP29-201ENST00000429913 985 ntBASIC14.93□□□□□ -0.02
HTTP42858 AKR1C6P-201ENST00000432950 983 ntBASIC14.93□□□□□ -0.02
HTTP42858 AL606970.2-201ENST00000434596 470 ntTSL 3 BASIC14.93□□□□□ -0.02
HTTP42858 RPE-208ENST00000436630 1128 ntTSL 2 BASIC14.93□□□□□ -0.02
HTTP42858 AC005154.1-227ENST00000579174 755 ntTSL 3 BASIC14.93□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms