Protein–RNA interactions for Protein: Q9Y546

LRRC42, Leucine-rich repeat-containing protein 42, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC42Q9Y546 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC21.17■□□□□ 0.98
LRRC42Q9Y546 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LRRC42Q9Y546 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LRRC42Q9Y546 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LRRC42Q9Y546 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LRRC42Q9Y546 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC21.16■□□□□ 0.98
LRRC42Q9Y546 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
LRRC42Q9Y546 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
LRRC42Q9Y546 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
LRRC42Q9Y546 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
LRRC42Q9Y546 AL161729.1-201ENST00000604104 1402 ntBASIC21.16■□□□□ 0.98
LRRC42Q9Y546 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC21.16■□□□□ 0.98
LRRC42Q9Y546 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
LRRC42Q9Y546 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LRRC42Q9Y546 PKD1P6-201ENST00000343738 4769 ntBASIC21.16■□□□□ 0.98
LRRC42Q9Y546 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRRC42Q9Y546 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC21.15■□□□□ 0.98
LRRC42Q9Y546 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC21.15■□□□□ 0.98
LRRC42Q9Y546 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRRC42Q9Y546 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRRC42Q9Y546 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LRRC42Q9Y546 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC21.15■□□□□ 0.98
LRRC42Q9Y546 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
LRRC42Q9Y546 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRRC42Q9Y546 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LRRC42Q9Y546 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
LRRC42Q9Y546 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC21.14■□□□□ 0.98
LRRC42Q9Y546 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
LRRC42Q9Y546 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
LRRC42Q9Y546 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
LRRC42Q9Y546 CIB2-204ENST00000557846 934 ntTSL 3 BASIC21.14■□□□□ 0.97
LRRC42Q9Y546 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
LRRC42Q9Y546 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LRRC42Q9Y546 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC21.14■□□□□ 0.97
LRRC42Q9Y546 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
LRRC42Q9Y546 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LRRC42Q9Y546 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LRRC42Q9Y546 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC21.13■□□□□ 0.97
LRRC42Q9Y546 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LRRC42Q9Y546 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LRRC42Q9Y546 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC21.13■□□□□ 0.97
LRRC42Q9Y546 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.13■□□□□ 0.97
LRRC42Q9Y546 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LRRC42Q9Y546 DUX4L28-201ENST00000623687 678 ntBASIC21.13■□□□□ 0.97
LRRC42Q9Y546 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
LRRC42Q9Y546 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LRRC42Q9Y546 AC010542.4-201ENST00000563151 1910 ntBASIC21.13■□□□□ 0.97
LRRC42Q9Y546 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC21.13■□□□□ 0.97
LRRC42Q9Y546 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LRRC42Q9Y546 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC21.13■□□□□ 0.97
LRRC42Q9Y546 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
LRRC42Q9Y546 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
LRRC42Q9Y546 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LRRC42Q9Y546 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
LRRC42Q9Y546 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC21.12■□□□□ 0.97
LRRC42Q9Y546 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LRRC42Q9Y546 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
LRRC42Q9Y546 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC21.12■□□□□ 0.97
LRRC42Q9Y546 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LRRC42Q9Y546 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
LRRC42Q9Y546 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LRRC42Q9Y546 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
LRRC42Q9Y546 AL359258.2-201ENST00000564063 1566 ntBASIC21.11■□□□□ 0.97
LRRC42Q9Y546 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC21.11■□□□□ 0.97
LRRC42Q9Y546 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
LRRC42Q9Y546 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
LRRC42Q9Y546 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LRRC42Q9Y546 AF106564.1-201ENST00000607058 2553 ntBASIC21.11■□□□□ 0.97
LRRC42Q9Y546 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LRRC42Q9Y546 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LRRC42Q9Y546 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LRRC42Q9Y546 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LRRC42Q9Y546 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
LRRC42Q9Y546 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LRRC42Q9Y546 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
LRRC42Q9Y546 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LRRC42Q9Y546 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LRRC42Q9Y546 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC21.1■□□□□ 0.97
LRRC42Q9Y546 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LRRC42Q9Y546 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
LRRC42Q9Y546 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
LRRC42Q9Y546 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
LRRC42Q9Y546 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
LRRC42Q9Y546 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.09■□□□□ 0.97
LRRC42Q9Y546 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LRRC42Q9Y546 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LRRC42Q9Y546 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LRRC42Q9Y546 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC21.09■□□□□ 0.97
LRRC42Q9Y546 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC21.09■□□□□ 0.97
LRRC42Q9Y546 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC21.09■□□□□ 0.97
LRRC42Q9Y546 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
LRRC42Q9Y546 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
LRRC42Q9Y546 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
LRRC42Q9Y546 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
LRRC42Q9Y546 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC21.08■□□□□ 0.97
LRRC42Q9Y546 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC21.08■□□□□ 0.97
LRRC42Q9Y546 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
LRRC42Q9Y546 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC21.08■□□□□ 0.96
LRRC42Q9Y546 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.07■□□□□ 0.96
LRRC42Q9Y546 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms