Protein–RNA interactions for Protein: Q9H2S5

RNF39, RING finger protein 39, humanhuman

Predictions only

Length 420 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF39Q9H2S5 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
RNF39Q9H2S5 AP002856.3-201ENST00000441665 635 ntTSL 3 BASIC24.49■■□□□ 1.51
RNF39Q9H2S5 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC24.49■■□□□ 1.51
RNF39Q9H2S5 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC24.49■■□□□ 1.51
RNF39Q9H2S5 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
RNF39Q9H2S5 GTSE1-AS1-202ENST00000623117 1518 ntBASIC24.49■■□□□ 1.51
RNF39Q9H2S5 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
RNF39Q9H2S5 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC24.49■■□□□ 1.51
RNF39Q9H2S5 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC24.49■■□□□ 1.51
RNF39Q9H2S5 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC24.49■■□□□ 1.51
RNF39Q9H2S5 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
RNF39Q9H2S5 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
RNF39Q9H2S5 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
RNF39Q9H2S5 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
RNF39Q9H2S5 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC24.48■■□□□ 1.51
RNF39Q9H2S5 ASB1-202ENST00000409297 878 ntTSL 5 BASIC24.48■■□□□ 1.51
RNF39Q9H2S5 LINC01124-201ENST00000409786 2117 ntBASIC24.48■■□□□ 1.51
RNF39Q9H2S5 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC24.48■■□□□ 1.51
RNF39Q9H2S5 STOX2-205ENST00000513034 807 ntTSL 3 BASIC24.48■■□□□ 1.51
RNF39Q9H2S5 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC24.48■■□□□ 1.51
RNF39Q9H2S5 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC24.48■■□□□ 1.51
RNF39Q9H2S5 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC24.48■■□□□ 1.51
RNF39Q9H2S5 SMIM11B-202ENST00000619874 843 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
RNF39Q9H2S5 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC24.48■■□□□ 1.51
RNF39Q9H2S5 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC24.47■■□□□ 1.51
RNF39Q9H2S5 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
RNF39Q9H2S5 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC24.47■■□□□ 1.51
RNF39Q9H2S5 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC24.47■■□□□ 1.51
RNF39Q9H2S5 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC24.47■■□□□ 1.51
RNF39Q9H2S5 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC24.47■■□□□ 1.51
RNF39Q9H2S5 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC24.47■■□□□ 1.51
RNF39Q9H2S5 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
RNF39Q9H2S5 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
RNF39Q9H2S5 AC105265.2-201ENST00000467189 838 ntBASIC24.47■■□□□ 1.51
RNF39Q9H2S5 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC24.47■■□□□ 1.51
RNF39Q9H2S5 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
RNF39Q9H2S5 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC24.47■■□□□ 1.51
RNF39Q9H2S5 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
RNF39Q9H2S5 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC24.46■■□□□ 1.51
RNF39Q9H2S5 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC24.46■■□□□ 1.51
RNF39Q9H2S5 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC24.46■■□□□ 1.51
RNF39Q9H2S5 AC084866.2-201ENST00000509956 449 ntTSL 2 BASIC24.46■■□□□ 1.51
RNF39Q9H2S5 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC24.46■■□□□ 1.51
RNF39Q9H2S5 AC136469.2-201ENST00000623944 1028 ntBASIC24.46■■□□□ 1.51
RNF39Q9H2S5 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
RNF39Q9H2S5 AL139125.2-201ENST00000623134 1869 ntBASIC24.45■■□□□ 1.51
RNF39Q9H2S5 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC24.45■■□□□ 1.5
RNF39Q9H2S5 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
RNF39Q9H2S5 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
RNF39Q9H2S5 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC24.45■■□□□ 1.5
RNF39Q9H2S5 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC24.45■■□□□ 1.5
RNF39Q9H2S5 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC24.45■■□□□ 1.5
RNF39Q9H2S5 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC24.45■■□□□ 1.5
RNF39Q9H2S5 AC008764.7-201ENST00000593779 1081 ntBASIC24.45■■□□□ 1.5
RNF39Q9H2S5 KLK13-207ENST00000596955 737 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
RNF39Q9H2S5 pRNA.6-201ENST00000610482 90 ntBASIC24.45■■□□□ 1.5
RNF39Q9H2S5 pRNA.5-201ENST00000612139 90 ntBASIC24.45■■□□□ 1.5
RNF39Q9H2S5 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC24.45■■□□□ 1.5
RNF39Q9H2S5 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC24.45■■□□□ 1.5
RNF39Q9H2S5 pRNA.11-201ENST00000618423 90 ntBASIC24.45■■□□□ 1.5
RNF39Q9H2S5 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
RNF39Q9H2S5 pRNA.13-201ENST00000619112 90 ntBASIC24.45■■□□□ 1.5
RNF39Q9H2S5 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC24.45■■□□□ 1.5
RNF39Q9H2S5 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC24.45■■□□□ 1.5
RNF39Q9H2S5 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC24.45■■□□□ 1.5
RNF39Q9H2S5 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
RNF39Q9H2S5 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
RNF39Q9H2S5 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC24.44■■□□□ 1.5
RNF39Q9H2S5 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
RNF39Q9H2S5 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC24.44■■□□□ 1.5
RNF39Q9H2S5 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
RNF39Q9H2S5 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC24.44■■□□□ 1.5
RNF39Q9H2S5 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
RNF39Q9H2S5 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC24.44■■□□□ 1.5
RNF39Q9H2S5 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
RNF39Q9H2S5 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
RNF39Q9H2S5 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
RNF39Q9H2S5 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
RNF39Q9H2S5 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
RNF39Q9H2S5 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
RNF39Q9H2S5 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
RNF39Q9H2S5 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
RNF39Q9H2S5 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
RNF39Q9H2S5 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
RNF39Q9H2S5 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
RNF39Q9H2S5 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
RNF39Q9H2S5 AC091305.1-201ENST00000479476 895 ntBASIC24.43■■□□□ 1.5
RNF39Q9H2S5 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC24.43■■□□□ 1.5
RNF39Q9H2S5 CA15P2-201ENST00000611168 834 ntBASIC24.43■■□□□ 1.5
RNF39Q9H2S5 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC24.43■■□□□ 1.5
RNF39Q9H2S5 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC24.43■■□□□ 1.5
RNF39Q9H2S5 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
RNF39Q9H2S5 AC004812.2-201ENST00000611079 2094 ntBASIC24.42■■□□□ 1.5
RNF39Q9H2S5 RPL23A-204ENST00000422514 1562 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
RNF39Q9H2S5 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
RNF39Q9H2S5 AC141586.4-201ENST00000624558 1573 ntBASIC24.42■■□□□ 1.5
RNF39Q9H2S5 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC24.42■■□□□ 1.5
RNF39Q9H2S5 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC24.42■■□□□ 1.5
RNF39Q9H2S5 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
RNF39Q9H2S5 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms