Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC25.15■■□□□ 1.62
UPF3AQ9H1J1 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC25.15■■□□□ 1.62
UPF3AQ9H1J1 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC25.15■■□□□ 1.62
UPF3AQ9H1J1 AC010525.1-201ENST00000585559 441 ntBASIC25.15■■□□□ 1.62
UPF3AQ9H1J1 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC25.15■■□□□ 1.62
UPF3AQ9H1J1 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC25.15■■□□□ 1.62
UPF3AQ9H1J1 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
UPF3AQ9H1J1 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC25.15■■□□□ 1.62
UPF3AQ9H1J1 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC25.15■■□□□ 1.62
UPF3AQ9H1J1 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC25.15■■□□□ 1.62
UPF3AQ9H1J1 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC25.15■■□□□ 1.62
UPF3AQ9H1J1 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
UPF3AQ9H1J1 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
UPF3AQ9H1J1 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC25.15■■□□□ 1.62
UPF3AQ9H1J1 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC25.14■■□□□ 1.62
UPF3AQ9H1J1 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
UPF3AQ9H1J1 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC25.14■■□□□ 1.62
UPF3AQ9H1J1 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC25.14■■□□□ 1.62
UPF3AQ9H1J1 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC25.14■■□□□ 1.62
UPF3AQ9H1J1 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
UPF3AQ9H1J1 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.61
UPF3AQ9H1J1 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC25.14■■□□□ 1.61
UPF3AQ9H1J1 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC25.13■■□□□ 1.61
UPF3AQ9H1J1 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
UPF3AQ9H1J1 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC25.13■■□□□ 1.61
UPF3AQ9H1J1 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
UPF3AQ9H1J1 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC25.13■■□□□ 1.61
UPF3AQ9H1J1 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
UPF3AQ9H1J1 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
UPF3AQ9H1J1 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
UPF3AQ9H1J1 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
UPF3AQ9H1J1 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
UPF3AQ9H1J1 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC25.13■■□□□ 1.61
UPF3AQ9H1J1 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
UPF3AQ9H1J1 TERF1P2-201ENST00000583350 1212 ntBASIC25.13■■□□□ 1.61
UPF3AQ9H1J1 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC25.13■■□□□ 1.61
UPF3AQ9H1J1 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC25.13■■□□□ 1.61
UPF3AQ9H1J1 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
UPF3AQ9H1J1 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC25.13■■□□□ 1.61
UPF3AQ9H1J1 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
UPF3AQ9H1J1 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC25.13■■□□□ 1.61
UPF3AQ9H1J1 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC25.12■■□□□ 1.61
UPF3AQ9H1J1 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC25.12■■□□□ 1.61
UPF3AQ9H1J1 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC25.12■■□□□ 1.61
UPF3AQ9H1J1 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC25.12■■□□□ 1.61
UPF3AQ9H1J1 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC25.12■■□□□ 1.61
UPF3AQ9H1J1 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
UPF3AQ9H1J1 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC25.12■■□□□ 1.61
UPF3AQ9H1J1 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
UPF3AQ9H1J1 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
UPF3AQ9H1J1 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC25.11■■□□□ 1.61
UPF3AQ9H1J1 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC25.11■■□□□ 1.61
UPF3AQ9H1J1 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
UPF3AQ9H1J1 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC25.11■■□□□ 1.61
UPF3AQ9H1J1 AC004911.1-201ENST00000416316 871 ntBASIC25.11■■□□□ 1.61
UPF3AQ9H1J1 KRT18P14-201ENST00000534205 1250 ntBASIC25.11■■□□□ 1.61
UPF3AQ9H1J1 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
UPF3AQ9H1J1 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC25.11■■□□□ 1.61
UPF3AQ9H1J1 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
UPF3AQ9H1J1 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC25.11■■□□□ 1.61
UPF3AQ9H1J1 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.61
UPF3AQ9H1J1 FP325331.1-202ENST00000623531 1380 ntBASIC25.1■■□□□ 1.61
UPF3AQ9H1J1 DLX3-202ENST00000512495 834 ntTSL 2 BASIC25.1■■□□□ 1.61
UPF3AQ9H1J1 DUX4L4-201ENST00000566884 1269 ntBASIC25.1■■□□□ 1.61
UPF3AQ9H1J1 NTF6G-201ENST00000591094 616 ntBASIC25.1■■□□□ 1.61
UPF3AQ9H1J1 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
UPF3AQ9H1J1 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC25.1■■□□□ 1.61
UPF3AQ9H1J1 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC25.09■■□□□ 1.61
UPF3AQ9H1J1 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
UPF3AQ9H1J1 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
UPF3AQ9H1J1 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC25.09■■□□□ 1.61
UPF3AQ9H1J1 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC25.09■■□□□ 1.61
UPF3AQ9H1J1 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC25.09■■□□□ 1.61
UPF3AQ9H1J1 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC25.09■■□□□ 1.61
UPF3AQ9H1J1 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
UPF3AQ9H1J1 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC25.09■■□□□ 1.61
UPF3AQ9H1J1 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
UPF3AQ9H1J1 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
UPF3AQ9H1J1 LINC02228-203ENST00000641970 1355 ntBASIC25.08■■□□□ 1.61
UPF3AQ9H1J1 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC25.08■■□□□ 1.61
UPF3AQ9H1J1 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
UPF3AQ9H1J1 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
UPF3AQ9H1J1 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC25.07■■□□□ 1.6
UPF3AQ9H1J1 LHPP-203ENST00000392757 840 ntTSL 3 BASIC25.07■■□□□ 1.6
UPF3AQ9H1J1 AP005435.1-201ENST00000529293 1178 ntBASIC25.07■■□□□ 1.6
UPF3AQ9H1J1 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC25.07■■□□□ 1.6
UPF3AQ9H1J1 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC25.07■■□□□ 1.6
UPF3AQ9H1J1 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC25.07■■□□□ 1.6
UPF3AQ9H1J1 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC25.07■■□□□ 1.6
UPF3AQ9H1J1 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
UPF3AQ9H1J1 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC25.06■■□□□ 1.6
UPF3AQ9H1J1 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
UPF3AQ9H1J1 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC25.06■■□□□ 1.6
UPF3AQ9H1J1 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
UPF3AQ9H1J1 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
UPF3AQ9H1J1 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
UPF3AQ9H1J1 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
UPF3AQ9H1J1 SHF-207ENST00000560540 2062 ntTSL 5 BASIC25.05■■□□□ 1.6
UPF3AQ9H1J1 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
UPF3AQ9H1J1 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms