Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NKX3-1Q99801 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
NKX3-1Q99801 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
NKX3-1Q99801 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NKX3-1Q99801 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC19.45■□□□□ 0.7
NKX3-1Q99801 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC19.45■□□□□ 0.7
NKX3-1Q99801 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC19.45■□□□□ 0.7
NKX3-1Q99801 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
NKX3-1Q99801 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
NKX3-1Q99801 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NKX3-1Q99801 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NKX3-1Q99801 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
NKX3-1Q99801 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC19.44■□□□□ 0.7
NKX3-1Q99801 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
NKX3-1Q99801 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NKX3-1Q99801 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NKX3-1Q99801 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
NKX3-1Q99801 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC19.44■□□□□ 0.7
NKX3-1Q99801 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NKX3-1Q99801 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
NKX3-1Q99801 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
NKX3-1Q99801 AC079630.1-202ENST00000618127 1840 ntBASIC19.44■□□□□ 0.7
NKX3-1Q99801 LINC00526-201ENST00000581067 1875 ntBASIC19.43■□□□□ 0.7
NKX3-1Q99801 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NKX3-1Q99801 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NKX3-1Q99801 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
NKX3-1Q99801 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
NKX3-1Q99801 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
NKX3-1Q99801 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC19.43■□□□□ 0.7
NKX3-1Q99801 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NKX3-1Q99801 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
NKX3-1Q99801 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NKX3-1Q99801 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
NKX3-1Q99801 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
NKX3-1Q99801 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC19.42■□□□□ 0.7
NKX3-1Q99801 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
NKX3-1Q99801 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.42■□□□□ 0.7
NKX3-1Q99801 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC19.42■□□□□ 0.7
NKX3-1Q99801 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
NKX3-1Q99801 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
NKX3-1Q99801 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC19.42■□□□□ 0.7
NKX3-1Q99801 AC139795.1-202ENST00000500444 432 ntBASIC19.42■□□□□ 0.7
NKX3-1Q99801 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
NKX3-1Q99801 AC011551.1-201ENST00000614101 683 ntBASIC19.42■□□□□ 0.7
NKX3-1Q99801 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NKX3-1Q99801 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
NKX3-1Q99801 MYB-221ENST00000527615 2381 ntTSL 5 BASIC19.42■□□□□ 0.7
NKX3-1Q99801 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
NKX3-1Q99801 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
NKX3-1Q99801 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC19.41■□□□□ 0.7
NKX3-1Q99801 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
NKX3-1Q99801 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NKX3-1Q99801 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NKX3-1Q99801 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
NKX3-1Q99801 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
NKX3-1Q99801 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
NKX3-1Q99801 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
NKX3-1Q99801 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NKX3-1Q99801 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NKX3-1Q99801 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC19.41■□□□□ 0.7
NKX3-1Q99801 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
NKX3-1Q99801 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NKX3-1Q99801 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
NKX3-1Q99801 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC19.41■□□□□ 0.7
NKX3-1Q99801 EFS-203ENST00000429593 2610 ntTSL 2 BASIC19.41■□□□□ 0.7
NKX3-1Q99801 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC19.41■□□□□ 0.7
NKX3-1Q99801 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NKX3-1Q99801 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NKX3-1Q99801 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NKX3-1Q99801 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC19.41■□□□□ 0.7
NKX3-1Q99801 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NKX3-1Q99801 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC19.4■□□□□ 0.7
NKX3-1Q99801 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NKX3-1Q99801 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC19.4■□□□□ 0.7
NKX3-1Q99801 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
NKX3-1Q99801 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC19.4■□□□□ 0.7
NKX3-1Q99801 AC120024.1-201ENST00000562672 995 ntBASIC19.4■□□□□ 0.7
NKX3-1Q99801 PVT1_1.1-201ENST00000615125 194 ntBASIC19.4■□□□□ 0.7
NKX3-1Q99801 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NKX3-1Q99801 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NKX3-1Q99801 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NKX3-1Q99801 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
NKX3-1Q99801 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.39■□□□□ 0.7
NKX3-1Q99801 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
NKX3-1Q99801 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
NKX3-1Q99801 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC19.39■□□□□ 0.69
NKX3-1Q99801 AC007375.3-201ENST00000600936 2314 ntBASIC19.39■□□□□ 0.69
NKX3-1Q99801 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
NKX3-1Q99801 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
NKX3-1Q99801 HYI-210ENST00000486909 905 ntTSL 5 BASIC19.39■□□□□ 0.69
NKX3-1Q99801 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC19.39■□□□□ 0.69
NKX3-1Q99801 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
NKX3-1Q99801 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
NKX3-1Q99801 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC19.39■□□□□ 0.69
NKX3-1Q99801 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC19.39■□□□□ 0.69
NKX3-1Q99801 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
NKX3-1Q99801 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC19.38■□□□□ 0.69
NKX3-1Q99801 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
NKX3-1Q99801 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
NKX3-1Q99801 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms