Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
HMGB4Q8WW32 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
HMGB4Q8WW32 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC22.57■■□□□ 1.2
HMGB4Q8WW32 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC22.57■■□□□ 1.2
HMGB4Q8WW32 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
HMGB4Q8WW32 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
HMGB4Q8WW32 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC22.57■■□□□ 1.2
HMGB4Q8WW32 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC22.57■■□□□ 1.2
HMGB4Q8WW32 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC22.57■■□□□ 1.2
HMGB4Q8WW32 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC22.57■■□□□ 1.2
HMGB4Q8WW32 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
HMGB4Q8WW32 AL137784.2-201ENST00000607332 1000 ntBASIC22.57■■□□□ 1.2
HMGB4Q8WW32 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
HMGB4Q8WW32 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
HMGB4Q8WW32 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.2
HMGB4Q8WW32 SHF-207ENST00000560540 2062 ntTSL 5 BASIC22.57■■□□□ 1.2
HMGB4Q8WW32 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC22.57■■□□□ 1.2
HMGB4Q8WW32 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
HMGB4Q8WW32 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC22.57■■□□□ 1.2
HMGB4Q8WW32 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC22.56■■□□□ 1.2
HMGB4Q8WW32 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC22.56■■□□□ 1.2
HMGB4Q8WW32 MIR572-201ENST00000384983 95 ntBASIC22.56■■□□□ 1.2
HMGB4Q8WW32 AC027612.3-201ENST00000413684 1047 ntBASIC22.56■■□□□ 1.2
HMGB4Q8WW32 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC22.56■■□□□ 1.2
HMGB4Q8WW32 AC090192.1-201ENST00000517740 490 ntBASIC22.56■■□□□ 1.2
HMGB4Q8WW32 RARRES2P11-201ENST00000635158 484 ntBASIC22.56■■□□□ 1.2
HMGB4Q8WW32 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC22.56■■□□□ 1.2
HMGB4Q8WW32 AP003733.4-201ENST00000623785 1697 ntBASIC22.55■■□□□ 1.2
HMGB4Q8WW32 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
HMGB4Q8WW32 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
HMGB4Q8WW32 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
HMGB4Q8WW32 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC22.55■■□□□ 1.2
HMGB4Q8WW32 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
HMGB4Q8WW32 AC012414.1-201ENST00000556676 535 ntBASIC22.55■■□□□ 1.2
HMGB4Q8WW32 AC010525.1-201ENST00000585559 441 ntBASIC22.55■■□□□ 1.2
HMGB4Q8WW32 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC22.55■■□□□ 1.2
HMGB4Q8WW32 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
HMGB4Q8WW32 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
HMGB4Q8WW32 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
HMGB4Q8WW32 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
HMGB4Q8WW32 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
HMGB4Q8WW32 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
HMGB4Q8WW32 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
HMGB4Q8WW32 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
HMGB4Q8WW32 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
HMGB4Q8WW32 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
HMGB4Q8WW32 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
HMGB4Q8WW32 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC22.54■■□□□ 1.2
HMGB4Q8WW32 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC22.54■■□□□ 1.2
HMGB4Q8WW32 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
HMGB4Q8WW32 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC22.54■■□□□ 1.2
HMGB4Q8WW32 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
HMGB4Q8WW32 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC22.54■■□□□ 1.2
HMGB4Q8WW32 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC22.54■■□□□ 1.2
HMGB4Q8WW32 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
HMGB4Q8WW32 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
HMGB4Q8WW32 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC22.54■■□□□ 1.2
HMGB4Q8WW32 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
HMGB4Q8WW32 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC22.54■■□□□ 1.2
HMGB4Q8WW32 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC22.54■■□□□ 1.2
HMGB4Q8WW32 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
HMGB4Q8WW32 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC22.54■■□□□ 1.2
HMGB4Q8WW32 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC22.53■■□□□ 1.2
HMGB4Q8WW32 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
HMGB4Q8WW32 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC22.53■■□□□ 1.2
HMGB4Q8WW32 AC123595.1-201ENST00000440769 1046 ntBASIC22.53■■□□□ 1.2
HMGB4Q8WW32 AL354811.1-201ENST00000610286 706 ntBASIC22.53■■□□□ 1.2
HMGB4Q8WW32 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC22.53■■□□□ 1.2
HMGB4Q8WW32 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
HMGB4Q8WW32 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC22.52■■□□□ 1.2
HMGB4Q8WW32 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
HMGB4Q8WW32 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
HMGB4Q8WW32 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC22.52■■□□□ 1.2
HMGB4Q8WW32 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC22.52■■□□□ 1.2
HMGB4Q8WW32 AL499627.2-201ENST00000606283 725 ntBASIC22.52■■□□□ 1.2
HMGB4Q8WW32 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
HMGB4Q8WW32 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
HMGB4Q8WW32 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
HMGB4Q8WW32 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
HMGB4Q8WW32 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC22.51■■□□□ 1.19
HMGB4Q8WW32 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
HMGB4Q8WW32 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC22.51■■□□□ 1.19
HMGB4Q8WW32 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC22.51■■□□□ 1.19
HMGB4Q8WW32 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC22.51■■□□□ 1.19
HMGB4Q8WW32 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC22.51■■□□□ 1.19
HMGB4Q8WW32 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
HMGB4Q8WW32 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
HMGB4Q8WW32 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
HMGB4Q8WW32 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
HMGB4Q8WW32 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
HMGB4Q8WW32 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC22.5■■□□□ 1.19
HMGB4Q8WW32 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
HMGB4Q8WW32 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
HMGB4Q8WW32 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
HMGB4Q8WW32 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
HMGB4Q8WW32 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC22.5■■□□□ 1.19
HMGB4Q8WW32 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
HMGB4Q8WW32 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
HMGB4Q8WW32 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC22.5■■□□□ 1.19
HMGB4Q8WW32 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms