Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLRN3Q8NCR9 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLRN3Q8NCR9 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLRN3Q8NCR9 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLRN3Q8NCR9 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLRN3Q8NCR9 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLRN3Q8NCR9 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
CLRN3Q8NCR9 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLRN3Q8NCR9 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC17.88■□□□□ 0.45
CLRN3Q8NCR9 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CLRN3Q8NCR9 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
CLRN3Q8NCR9 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC17.87■□□□□ 0.45
CLRN3Q8NCR9 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC17.87■□□□□ 0.45
CLRN3Q8NCR9 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
CLRN3Q8NCR9 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLRN3Q8NCR9 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLRN3Q8NCR9 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC17.87■□□□□ 0.45
CLRN3Q8NCR9 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
CLRN3Q8NCR9 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC17.87■□□□□ 0.45
CLRN3Q8NCR9 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLRN3Q8NCR9 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
CLRN3Q8NCR9 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CLRN3Q8NCR9 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLRN3Q8NCR9 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
CLRN3Q8NCR9 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
CLRN3Q8NCR9 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLRN3Q8NCR9 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC17.86■□□□□ 0.45
CLRN3Q8NCR9 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC17.86■□□□□ 0.45
CLRN3Q8NCR9 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CLRN3Q8NCR9 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLRN3Q8NCR9 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CLRN3Q8NCR9 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
CLRN3Q8NCR9 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLRN3Q8NCR9 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC17.86■□□□□ 0.45
CLRN3Q8NCR9 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLRN3Q8NCR9 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLRN3Q8NCR9 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CLRN3Q8NCR9 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC17.86■□□□□ 0.45
CLRN3Q8NCR9 AL157384.1-201ENST00000445995 2473 ntBASIC17.86■□□□□ 0.45
CLRN3Q8NCR9 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLRN3Q8NCR9 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLRN3Q8NCR9 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLRN3Q8NCR9 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLRN3Q8NCR9 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLRN3Q8NCR9 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLRN3Q8NCR9 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLRN3Q8NCR9 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CLRN3Q8NCR9 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLRN3Q8NCR9 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
CLRN3Q8NCR9 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
CLRN3Q8NCR9 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC17.85■□□□□ 0.45
CLRN3Q8NCR9 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CLRN3Q8NCR9 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
CLRN3Q8NCR9 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLRN3Q8NCR9 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLRN3Q8NCR9 HLA-L-211ENST00000482052 1765 ntBASIC17.84■□□□□ 0.45
CLRN3Q8NCR9 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLRN3Q8NCR9 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC17.84■□□□□ 0.45
CLRN3Q8NCR9 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC17.84■□□□□ 0.45
CLRN3Q8NCR9 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CLRN3Q8NCR9 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
CLRN3Q8NCR9 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC17.84■□□□□ 0.45
CLRN3Q8NCR9 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
CLRN3Q8NCR9 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLRN3Q8NCR9 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC17.84■□□□□ 0.45
CLRN3Q8NCR9 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC17.84■□□□□ 0.45
CLRN3Q8NCR9 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLRN3Q8NCR9 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
CLRN3Q8NCR9 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLRN3Q8NCR9 ESRRAP2-201ENST00000418437 1549 ntBASIC17.83■□□□□ 0.45
CLRN3Q8NCR9 LINC00273-201ENST00000539813 1452 ntBASIC17.83■□□□□ 0.45
CLRN3Q8NCR9 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC17.83■□□□□ 0.45
CLRN3Q8NCR9 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CLRN3Q8NCR9 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CLRN3Q8NCR9 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CLRN3Q8NCR9 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CLRN3Q8NCR9 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CLRN3Q8NCR9 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CLRN3Q8NCR9 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
CLRN3Q8NCR9 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC17.83■□□□□ 0.44
CLRN3Q8NCR9 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC17.83■□□□□ 0.44
CLRN3Q8NCR9 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC17.83■□□□□ 0.44
CLRN3Q8NCR9 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CLRN3Q8NCR9 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CLRN3Q8NCR9 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CLRN3Q8NCR9 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.44
CLRN3Q8NCR9 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
CLRN3Q8NCR9 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
CLRN3Q8NCR9 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
CLRN3Q8NCR9 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CLRN3Q8NCR9 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
CLRN3Q8NCR9 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC17.83■□□□□ 0.44
CLRN3Q8NCR9 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC17.82■□□□□ 0.44
CLRN3Q8NCR9 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLRN3Q8NCR9 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CLRN3Q8NCR9 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLRN3Q8NCR9 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CLRN3Q8NCR9 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC17.82■□□□□ 0.44
CLRN3Q8NCR9 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLRN3Q8NCR9 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms