Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC28AQ8IWP9 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC28AQ8IWP9 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC28AQ8IWP9 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC28AQ8IWP9 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC28AQ8IWP9 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC28AQ8IWP9 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC18.63■□□□□ 0.57
CCDC28AQ8IWP9 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC28AQ8IWP9 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC18.63■□□□□ 0.57
CCDC28AQ8IWP9 AC026310.3-201ENST00000625186 2373 ntBASIC18.63■□□□□ 0.57
CCDC28AQ8IWP9 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC28AQ8IWP9 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC28AQ8IWP9 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC28AQ8IWP9 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC18.62■□□□□ 0.57
CCDC28AQ8IWP9 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CCDC28AQ8IWP9 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC28AQ8IWP9 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.62■□□□□ 0.57
CCDC28AQ8IWP9 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC28AQ8IWP9 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC18.62■□□□□ 0.57
CCDC28AQ8IWP9 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CCDC28AQ8IWP9 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC28AQ8IWP9 LINC01521-201ENST00000504184 1943 ntBASIC18.62■□□□□ 0.57
CCDC28AQ8IWP9 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC28AQ8IWP9 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC18.61■□□□□ 0.57
CCDC28AQ8IWP9 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC28AQ8IWP9 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC28AQ8IWP9 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC28AQ8IWP9 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC28AQ8IWP9 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.61■□□□□ 0.57
CCDC28AQ8IWP9 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CCDC28AQ8IWP9 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
CCDC28AQ8IWP9 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC28AQ8IWP9 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC28AQ8IWP9 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC28AQ8IWP9 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC28AQ8IWP9 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC28AQ8IWP9 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC28AQ8IWP9 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC28AQ8IWP9 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC28AQ8IWP9 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CCDC28AQ8IWP9 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC28AQ8IWP9 PEX7-203ENST00000541292 945 ntTSL 5 BASIC18.6■□□□□ 0.57
CCDC28AQ8IWP9 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
CCDC28AQ8IWP9 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC28AQ8IWP9 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC28AQ8IWP9 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC28AQ8IWP9 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC28AQ8IWP9 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC28AQ8IWP9 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC28AQ8IWP9 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC28AQ8IWP9 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC28AQ8IWP9 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC18.59■□□□□ 0.57
CCDC28AQ8IWP9 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
CCDC28AQ8IWP9 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC28AQ8IWP9 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
CCDC28AQ8IWP9 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC28AQ8IWP9 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC28AQ8IWP9 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC28AQ8IWP9 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
CCDC28AQ8IWP9 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC28AQ8IWP9 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC28AQ8IWP9 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC18.59■□□□□ 0.57
CCDC28AQ8IWP9 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC28AQ8IWP9 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC18.59■□□□□ 0.57
CCDC28AQ8IWP9 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC28AQ8IWP9 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC28AQ8IWP9 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC28AQ8IWP9 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
CCDC28AQ8IWP9 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC28AQ8IWP9 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.58■□□□□ 0.57
CCDC28AQ8IWP9 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC28AQ8IWP9 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
CCDC28AQ8IWP9 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC28AQ8IWP9 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC18.58■□□□□ 0.56
CCDC28AQ8IWP9 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC18.58■□□□□ 0.56
CCDC28AQ8IWP9 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC28AQ8IWP9 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC28AQ8IWP9 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC28AQ8IWP9 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC28AQ8IWP9 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC28AQ8IWP9 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC18.58■□□□□ 0.56
CCDC28AQ8IWP9 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC28AQ8IWP9 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
CCDC28AQ8IWP9 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.58■□□□□ 0.56
CCDC28AQ8IWP9 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC28AQ8IWP9 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC18.57■□□□□ 0.56
CCDC28AQ8IWP9 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC18.57■□□□□ 0.56
CCDC28AQ8IWP9 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC28AQ8IWP9 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC28AQ8IWP9 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC18.57■□□□□ 0.56
CCDC28AQ8IWP9 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.57■□□□□ 0.56
CCDC28AQ8IWP9 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC28AQ8IWP9 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC28AQ8IWP9 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.57■□□□□ 0.56
CCDC28AQ8IWP9 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC28AQ8IWP9 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC18.57■□□□□ 0.56
CCDC28AQ8IWP9 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC18.57■□□□□ 0.56
CCDC28AQ8IWP9 AC026471.1-201ENST00000564629 3026 ntBASIC18.57■□□□□ 0.56
CCDC28AQ8IWP9 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC18.57■□□□□ 0.56
CCDC28AQ8IWP9 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms