Protein–RNA interactions for Protein: Q86TM3

DDX53, Probable ATP-dependent RNA helicase DDX53, humanhuman

Known RBP Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX53Q86TM3 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC23.92■■□□□ 1.42
DDX53Q86TM3 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
DDX53Q86TM3 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC23.92■■□□□ 1.42
DDX53Q86TM3 AC022517.1-201ENST00000592429 346 ntBASIC23.92■■□□□ 1.42
DDX53Q86TM3 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
DDX53Q86TM3 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC23.92■■□□□ 1.42
DDX53Q86TM3 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC23.92■■□□□ 1.42
DDX53Q86TM3 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
DDX53Q86TM3 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC23.91■■□□□ 1.42
DDX53Q86TM3 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC23.91■■□□□ 1.42
DDX53Q86TM3 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC23.91■■□□□ 1.42
DDX53Q86TM3 DUX4L2-201ENST00000561772 1275 ntBASIC23.91■■□□□ 1.42
DDX53Q86TM3 DUX4L4-201ENST00000566884 1269 ntBASIC23.91■■□□□ 1.42
DDX53Q86TM3 AL354811.1-201ENST00000610286 706 ntBASIC23.91■■□□□ 1.42
DDX53Q86TM3 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC23.91■■□□□ 1.42
DDX53Q86TM3 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC23.91■■□□□ 1.42
DDX53Q86TM3 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC23.91■■□□□ 1.42
DDX53Q86TM3 DUX4L6-201ENST00000626483 1275 ntBASIC23.91■■□□□ 1.42
DDX53Q86TM3 DUX4L1-201ENST00000627662 1275 ntBASIC23.91■■□□□ 1.42
DDX53Q86TM3 DUX4L8-201ENST00000629013 1275 ntBASIC23.91■■□□□ 1.42
DDX53Q86TM3 DUX4L3-201ENST00000630187 1275 ntBASIC23.91■■□□□ 1.42
DDX53Q86TM3 DUX4L7-201ENST00000630678 1275 ntBASIC23.91■■□□□ 1.42
DDX53Q86TM3 DUX4L5-201ENST00000630834 1275 ntBASIC23.91■■□□□ 1.42
DDX53Q86TM3 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC23.91■■□□□ 1.42
DDX53Q86TM3 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
DDX53Q86TM3 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC23.91■■□□□ 1.42
DDX53Q86TM3 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
DDX53Q86TM3 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
DDX53Q86TM3 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC23.9■■□□□ 1.42
DDX53Q86TM3 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.42
DDX53Q86TM3 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
DDX53Q86TM3 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC23.9■■□□□ 1.42
DDX53Q86TM3 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC23.9■■□□□ 1.42
DDX53Q86TM3 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC23.9■■□□□ 1.42
DDX53Q86TM3 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC23.9■■□□□ 1.42
DDX53Q86TM3 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC23.9■■□□□ 1.42
DDX53Q86TM3 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC23.9■■□□□ 1.42
DDX53Q86TM3 AC012414.1-201ENST00000556676 535 ntBASIC23.9■■□□□ 1.42
DDX53Q86TM3 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
DDX53Q86TM3 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
DDX53Q86TM3 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC23.89■■□□□ 1.41
DDX53Q86TM3 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC23.89■■□□□ 1.41
DDX53Q86TM3 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.41
DDX53Q86TM3 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC23.89■■□□□ 1.41
DDX53Q86TM3 OR2I1P-207ENST00000453522 948 ntBASIC23.89■■□□□ 1.41
DDX53Q86TM3 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC23.89■■□□□ 1.41
DDX53Q86TM3 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
DDX53Q86TM3 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC23.89■■□□□ 1.41
DDX53Q86TM3 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC23.89■■□□□ 1.41
DDX53Q86TM3 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
DDX53Q86TM3 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC23.89■■□□□ 1.41
DDX53Q86TM3 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
DDX53Q86TM3 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC23.89■■□□□ 1.41
DDX53Q86TM3 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC23.88■■□□□ 1.41
DDX53Q86TM3 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
DDX53Q86TM3 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
DDX53Q86TM3 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
DDX53Q86TM3 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
DDX53Q86TM3 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC23.88■■□□□ 1.41
DDX53Q86TM3 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC23.88■■□□□ 1.41
DDX53Q86TM3 AC010525.1-201ENST00000585559 441 ntBASIC23.88■■□□□ 1.41
DDX53Q86TM3 IKBKGP1-201ENST00000612193 1073 ntBASIC23.88■■□□□ 1.41
DDX53Q86TM3 MIR6084-201ENST00000622012 110 ntBASIC23.88■■□□□ 1.41
DDX53Q86TM3 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC23.88■■□□□ 1.41
DDX53Q86TM3 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
DDX53Q86TM3 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
DDX53Q86TM3 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
DDX53Q86TM3 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
DDX53Q86TM3 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
DDX53Q86TM3 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
DDX53Q86TM3 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC23.87■■□□□ 1.41
DDX53Q86TM3 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC23.87■■□□□ 1.41
DDX53Q86TM3 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC23.87■■□□□ 1.41
DDX53Q86TM3 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC23.87■■□□□ 1.41
DDX53Q86TM3 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
DDX53Q86TM3 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
DDX53Q86TM3 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
DDX53Q86TM3 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC23.86■■□□□ 1.41
DDX53Q86TM3 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC23.86■■□□□ 1.41
DDX53Q86TM3 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC23.86■■□□□ 1.41
DDX53Q86TM3 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
DDX53Q86TM3 RARRES2P11-201ENST00000635158 484 ntBASIC23.86■■□□□ 1.41
DDX53Q86TM3 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC23.86■■□□□ 1.41
DDX53Q86TM3 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
DDX53Q86TM3 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
DDX53Q86TM3 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC23.85■■□□□ 1.41
DDX53Q86TM3 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
DDX53Q86TM3 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC23.85■■□□□ 1.41
DDX53Q86TM3 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
DDX53Q86TM3 EI24-213ENST00000618552 1747 ntTSL 5 BASIC23.85■■□□□ 1.41
DDX53Q86TM3 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
DDX53Q86TM3 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC23.85■■□□□ 1.41
DDX53Q86TM3 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC23.85■■□□□ 1.41
DDX53Q86TM3 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC23.85■■□□□ 1.41
DDX53Q86TM3 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
DDX53Q86TM3 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
DDX53Q86TM3 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC23.85■■□□□ 1.41
DDX53Q86TM3 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
DDX53Q86TM3 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
DDX53Q86TM3 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC23.84■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms