Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC16.31■□□□□ 0.2
COL7A1Q02388 pRNA.6-201ENST00000610482 90 ntBASIC16.31■□□□□ 0.2
COL7A1Q02388 pRNA.5-201ENST00000612139 90 ntBASIC16.31■□□□□ 0.2
COL7A1Q02388 pRNA.11-201ENST00000618423 90 ntBASIC16.31■□□□□ 0.2
COL7A1Q02388 pRNA.13-201ENST00000619112 90 ntBASIC16.31■□□□□ 0.2
COL7A1Q02388 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC16.31■□□□□ 0.2
COL7A1Q02388 AC010501.1-201ENST00000606270 1962 ntBASIC16.3■□□□□ 0.2
COL7A1Q02388 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL7A1Q02388 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
COL7A1Q02388 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL7A1Q02388 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC16.3■□□□□ 0.2
COL7A1Q02388 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC16.3■□□□□ 0.2
COL7A1Q02388 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
COL7A1Q02388 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL7A1Q02388 AL022069.1-201ENST00000568025 1636 ntBASIC16.3■□□□□ 0.2
COL7A1Q02388 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL7A1Q02388 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL7A1Q02388 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC16.3■□□□□ 0.2
COL7A1Q02388 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL7A1Q02388 HSCB-202ENST00000398941 955 ntTSL 2 BASIC16.3■□□□□ 0.2
COL7A1Q02388 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC16.3■□□□□ 0.2
COL7A1Q02388 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL7A1Q02388 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL7A1Q02388 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL7A1Q02388 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC16.29■□□□□ 0.2
COL7A1Q02388 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC16.29■□□□□ 0.2
COL7A1Q02388 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL7A1Q02388 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL7A1Q02388 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC16.29■□□□□ 0.2
COL7A1Q02388 AC004854.2-201ENST00000608450 1441 ntBASIC16.29■□□□□ 0.2
COL7A1Q02388 CD99P1-205ENST00000527459 561 ntBASIC16.29■□□□□ 0.2
COL7A1Q02388 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC16.29■□□□□ 0.2
COL7A1Q02388 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL7A1Q02388 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
COL7A1Q02388 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL7A1Q02388 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL7A1Q02388 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
COL7A1Q02388 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL7A1Q02388 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC16.28■□□□□ 0.2
COL7A1Q02388 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL7A1Q02388 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC16.28■□□□□ 0.2
COL7A1Q02388 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL7A1Q02388 AC006970.2-201ENST00000450065 779 ntBASIC16.28■□□□□ 0.2
COL7A1Q02388 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC16.28■□□□□ 0.2
COL7A1Q02388 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL7A1Q02388 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL7A1Q02388 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL7A1Q02388 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL7A1Q02388 PARP1-210ENST00000629232 477 ntTSL 5 BASIC16.27■□□□□ 0.19
COL7A1Q02388 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC16.27■□□□□ 0.19
COL7A1Q02388 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
COL7A1Q02388 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL7A1Q02388 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC16.26■□□□□ 0.19
COL7A1Q02388 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL7A1Q02388 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
COL7A1Q02388 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL7A1Q02388 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
COL7A1Q02388 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL7A1Q02388 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL7A1Q02388 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
COL7A1Q02388 LHPP-203ENST00000392757 840 ntTSL 3 BASIC16.26■□□□□ 0.19
COL7A1Q02388 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC16.26■□□□□ 0.19
COL7A1Q02388 AC098934.4-201ENST00000564127 592 ntBASIC16.26■□□□□ 0.19
COL7A1Q02388 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC16.26■□□□□ 0.19
COL7A1Q02388 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC16.26■□□□□ 0.19
COL7A1Q02388 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
COL7A1Q02388 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC16.26■□□□□ 0.19
COL7A1Q02388 STK32C-205ENST00000456004 607 ntTSL 2 BASIC16.25■□□□□ 0.19
COL7A1Q02388 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL7A1Q02388 AC009086.3-201ENST00000623486 1008 ntBASIC16.25■□□□□ 0.19
COL7A1Q02388 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL7A1Q02388 KLF13-207ENST00000560473 489 ntTSL 3 BASIC16.25■□□□□ 0.19
COL7A1Q02388 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC16.25■□□□□ 0.19
COL7A1Q02388 MPST-204ENST00000404393 1329 ntTSL 5 BASIC16.25■□□□□ 0.19
COL7A1Q02388 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
COL7A1Q02388 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL7A1Q02388 CD37-213ENST00000598095 1598 ntTSL 2 BASIC16.25■□□□□ 0.19
COL7A1Q02388 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC16.25■□□□□ 0.19
COL7A1Q02388 SLC7A5P2-201ENST00000553010 536 ntBASIC16.25■□□□□ 0.19
COL7A1Q02388 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
COL7A1Q02388 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL7A1Q02388 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL7A1Q02388 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC16.24■□□□□ 0.19
COL7A1Q02388 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
COL7A1Q02388 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC16.24■□□□□ 0.19
COL7A1Q02388 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC16.24■□□□□ 0.19
COL7A1Q02388 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC16.24■□□□□ 0.19
COL7A1Q02388 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL7A1Q02388 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL7A1Q02388 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
COL7A1Q02388 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC16.24■□□□□ 0.19
COL7A1Q02388 DET1-205ENST00000558413 583 ntTSL 4 BASIC16.24■□□□□ 0.19
COL7A1Q02388 AL138781.1-201ENST00000566567 1274 ntBASIC16.24■□□□□ 0.19
COL7A1Q02388 TBCB-214ENST00000629269 413 ntTSL 5 BASIC16.24■□□□□ 0.19
COL7A1Q02388 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL7A1Q02388 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC16.24■□□□□ 0.19
COL7A1Q02388 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC16.23■□□□□ 0.19
COL7A1Q02388 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL7A1Q02388 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
COL7A1Q02388 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms