Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
RNF4P78317 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RNF4P78317 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
RNF4P78317 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
RNF4P78317 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.74■□□□□ 0.91
RNF4P78317 PBX2P1-201ENST00000493219 1291 ntBASIC20.74■□□□□ 0.91
RNF4P78317 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC20.74■□□□□ 0.91
RNF4P78317 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
RNF4P78317 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.74■□□□□ 0.91
RNF4P78317 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.74■□□□□ 0.91
RNF4P78317 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.74■□□□□ 0.91
RNF4P78317 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC20.74■□□□□ 0.91
RNF4P78317 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
RNF4P78317 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
RNF4P78317 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RNF4P78317 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
RNF4P78317 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
RNF4P78317 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
RNF4P78317 LINC01529-204ENST00000636474 1715 ntBASIC20.73■□□□□ 0.91
RNF4P78317 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RNF4P78317 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC20.73■□□□□ 0.91
RNF4P78317 AL138724.1-201ENST00000606771 1088 ntBASIC20.73■□□□□ 0.91
RNF4P78317 AC106739.1-201ENST00000617035 715 ntBASIC20.73■□□□□ 0.91
RNF4P78317 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
RNF4P78317 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
RNF4P78317 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RNF4P78317 AC135279.3-201ENST00000610945 1311 ntBASIC20.73■□□□□ 0.91
RNF4P78317 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RNF4P78317 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
RNF4P78317 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC20.73■□□□□ 0.91
RNF4P78317 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
RNF4P78317 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
RNF4P78317 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.72■□□□□ 0.91
RNF4P78317 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.72■□□□□ 0.91
RNF4P78317 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
RNF4P78317 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RNF4P78317 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC20.72■□□□□ 0.91
RNF4P78317 AC024257.2-201ENST00000549699 147 ntBASIC20.72■□□□□ 0.91
RNF4P78317 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.72■□□□□ 0.91
RNF4P78317 DUX4L4-201ENST00000566884 1269 ntBASIC20.72■□□□□ 0.91
RNF4P78317 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.72■□□□□ 0.91
RNF4P78317 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.72■□□□□ 0.91
RNF4P78317 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.72■□□□□ 0.91
RNF4P78317 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.72■□□□□ 0.91
RNF4P78317 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
RNF4P78317 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC20.72■□□□□ 0.91
RNF4P78317 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RNF4P78317 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
RNF4P78317 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.72■□□□□ 0.91
RNF4P78317 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RNF4P78317 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RNF4P78317 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
RNF4P78317 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
RNF4P78317 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
RNF4P78317 MIR3181-201ENST00000578512 73 ntBASIC20.71■□□□□ 0.91
RNF4P78317 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.71■□□□□ 0.91
RNF4P78317 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.71■□□□□ 0.91
RNF4P78317 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
RNF4P78317 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
RNF4P78317 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RNF4P78317 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
RNF4P78317 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RNF4P78317 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
RNF4P78317 MIR638-201ENST00000385237 100 ntBASIC20.7■□□□□ 0.9
RNF4P78317 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC20.7■□□□□ 0.9
RNF4P78317 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
RNF4P78317 pRNA.6-201ENST00000610482 90 ntBASIC20.7■□□□□ 0.9
RNF4P78317 pRNA.5-201ENST00000612139 90 ntBASIC20.7■□□□□ 0.9
RNF4P78317 pRNA.11-201ENST00000618423 90 ntBASIC20.7■□□□□ 0.9
RNF4P78317 pRNA.13-201ENST00000619112 90 ntBASIC20.7■□□□□ 0.9
RNF4P78317 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RNF4P78317 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
RNF4P78317 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RNF4P78317 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RNF4P78317 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.69■□□□□ 0.9
RNF4P78317 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RNF4P78317 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC20.69■□□□□ 0.9
RNF4P78317 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
RNF4P78317 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RNF4P78317 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.69■□□□□ 0.9
RNF4P78317 AC133561.4-201ENST00000566112 224 ntBASIC20.69■□□□□ 0.9
RNF4P78317 AC011298.3-201ENST00000615796 283 ntBASIC20.69■□□□□ 0.9
RNF4P78317 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC20.69■□□□□ 0.9
RNF4P78317 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RNF4P78317 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RNF4P78317 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF4P78317 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF4P78317 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC20.68■□□□□ 0.9
RNF4P78317 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF4P78317 ANOS2P-203ENST00000472227 1816 ntBASIC20.68■□□□□ 0.9
RNF4P78317 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RNF4P78317 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC20.68■□□□□ 0.9
RNF4P78317 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF4P78317 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.68■□□□□ 0.9
RNF4P78317 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF4P78317 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.67■□□□□ 0.9
RNF4P78317 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC20.67■□□□□ 0.9
RNF4P78317 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC20.67■□□□□ 0.9
RNF4P78317 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC20.67■□□□□ 0.9
RNF4P78317 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 217.3 ms