Protein–RNA interactions for Protein: P59780

AP3S2, AP-3 complex subunit sigma-2, humanhuman

Predictions only

Length 193 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3S2P59780 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
AP3S2P59780 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
AP3S2P59780 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
AP3S2P59780 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC19.22■□□□□ 0.67
AP3S2P59780 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC19.22■□□□□ 0.67
AP3S2P59780 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
AP3S2P59780 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
AP3S2P59780 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
AP3S2P59780 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
AP3S2P59780 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
AP3S2P59780 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
AP3S2P59780 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC19.21■□□□□ 0.67
AP3S2P59780 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
AP3S2P59780 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
AP3S2P59780 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
AP3S2P59780 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
AP3S2P59780 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
AP3S2P59780 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC19.21■□□□□ 0.67
AP3S2P59780 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC19.21■□□□□ 0.67
AP3S2P59780 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
AP3S2P59780 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
AP3S2P59780 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC19.2■□□□□ 0.66
AP3S2P59780 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
AP3S2P59780 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
AP3S2P59780 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
AP3S2P59780 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC19.2■□□□□ 0.66
AP3S2P59780 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
AP3S2P59780 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
AP3S2P59780 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
AP3S2P59780 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
AP3S2P59780 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
AP3S2P59780 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
AP3S2P59780 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
AP3S2P59780 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
AP3S2P59780 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
AP3S2P59780 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
AP3S2P59780 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
AP3S2P59780 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
AP3S2P59780 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
AP3S2P59780 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
AP3S2P59780 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC19.19■□□□□ 0.66
AP3S2P59780 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
AP3S2P59780 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
AP3S2P59780 HGH1-207ENST00000628266 258 ntTSL 5 BASIC19.19■□□□□ 0.66
AP3S2P59780 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
AP3S2P59780 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
AP3S2P59780 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
AP3S2P59780 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
AP3S2P59780 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
AP3S2P59780 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC19.19■□□□□ 0.66
AP3S2P59780 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
AP3S2P59780 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.18■□□□□ 0.66
AP3S2P59780 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC19.18■□□□□ 0.66
AP3S2P59780 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
AP3S2P59780 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
AP3S2P59780 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
AP3S2P59780 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
AP3S2P59780 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.18■□□□□ 0.66
AP3S2P59780 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC19.18■□□□□ 0.66
AP3S2P59780 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
AP3S2P59780 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
AP3S2P59780 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
AP3S2P59780 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
AP3S2P59780 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
AP3S2P59780 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
AP3S2P59780 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
AP3S2P59780 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC19.17■□□□□ 0.66
AP3S2P59780 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC19.17■□□□□ 0.66
AP3S2P59780 AC139530.1-201ENST00000575312 1977 ntBASIC19.17■□□□□ 0.66
AP3S2P59780 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC19.17■□□□□ 0.66
AP3S2P59780 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
AP3S2P59780 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
AP3S2P59780 SMPD5-203ENST00000639008 1464 ntBASIC19.16■□□□□ 0.66
AP3S2P59780 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.16■□□□□ 0.66
AP3S2P59780 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC19.16■□□□□ 0.66
AP3S2P59780 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
AP3S2P59780 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC19.16■□□□□ 0.66
AP3S2P59780 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
AP3S2P59780 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
AP3S2P59780 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
AP3S2P59780 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
AP3S2P59780 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC19.16■□□□□ 0.66
AP3S2P59780 FBXW4P1-201ENST00000426721 2239 ntBASIC19.16■□□□□ 0.66
AP3S2P59780 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
AP3S2P59780 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
AP3S2P59780 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
AP3S2P59780 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
AP3S2P59780 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
AP3S2P59780 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
AP3S2P59780 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
AP3S2P59780 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
AP3S2P59780 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
AP3S2P59780 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
AP3S2P59780 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC19.15■□□□□ 0.66
AP3S2P59780 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
AP3S2P59780 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.15■□□□□ 0.66
AP3S2P59780 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
AP3S2P59780 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
AP3S2P59780 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC19.15■□□□□ 0.66
AP3S2P59780 AL157400.5-201ENST00000507624 621 ntBASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms