Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC22.61■■□□□ 1.21
HADHAP40939 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
HADHAP40939 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
HADHAP40939 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
HADHAP40939 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
HADHAP40939 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
HADHAP40939 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
HADHAP40939 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
HADHAP40939 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC22.61■■□□□ 1.21
HADHAP40939 UNC93B8-201ENST00000511903 705 ntBASIC22.61■■□□□ 1.21
HADHAP40939 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
HADHAP40939 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC22.61■■□□□ 1.21
HADHAP40939 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC22.6■■□□□ 1.21
HADHAP40939 CD72-202ENST00000378430 585 ntTSL 3 BASIC22.6■■□□□ 1.21
HADHAP40939 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC22.6■■□□□ 1.21
HADHAP40939 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC22.6■■□□□ 1.21
HADHAP40939 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
HADHAP40939 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC22.6■■□□□ 1.21
HADHAP40939 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
HADHAP40939 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
HADHAP40939 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC22.59■■□□□ 1.21
HADHAP40939 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
HADHAP40939 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
HADHAP40939 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC22.59■■□□□ 1.21
HADHAP40939 TFPT-201ENST00000391757 774 ntTSL 5 BASIC22.59■■□□□ 1.21
HADHAP40939 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
HADHAP40939 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC22.59■■□□□ 1.21
HADHAP40939 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC22.59■■□□□ 1.21
HADHAP40939 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
HADHAP40939 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC22.59■■□□□ 1.21
HADHAP40939 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
HADHAP40939 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.21
HADHAP40939 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC22.58■■□□□ 1.21
HADHAP40939 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
HADHAP40939 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC22.58■■□□□ 1.21
HADHAP40939 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC22.58■■□□□ 1.21
HADHAP40939 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC22.58■■□□□ 1.21
HADHAP40939 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.21
HADHAP40939 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.2
HADHAP40939 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC22.58■■□□□ 1.2
HADHAP40939 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC22.58■■□□□ 1.2
HADHAP40939 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC22.58■■□□□ 1.2
HADHAP40939 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC22.57■■□□□ 1.2
HADHAP40939 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
HADHAP40939 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
HADHAP40939 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
HADHAP40939 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
HADHAP40939 LSM4-201ENST00000252816 986 ntTSL 2 BASIC22.57■■□□□ 1.2
HADHAP40939 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC22.57■■□□□ 1.2
HADHAP40939 KRT16P3-201ENST00000439127 1283 ntBASIC22.57■■□□□ 1.2
HADHAP40939 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC22.57■■□□□ 1.2
HADHAP40939 MIR6724-1-201ENST00000616420 92 ntBASIC22.57■■□□□ 1.2
HADHAP40939 MIR6724-2-201ENST00000616483 92 ntBASIC22.57■■□□□ 1.2
HADHAP40939 MIR6724-4-201ENST00000617390 92 ntBASIC22.57■■□□□ 1.2
HADHAP40939 MIR6724-3-201ENST00000622482 92 ntBASIC22.57■■□□□ 1.2
HADHAP40939 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
HADHAP40939 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
HADHAP40939 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC22.57■■□□□ 1.2
HADHAP40939 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC22.57■■□□□ 1.2
HADHAP40939 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
HADHAP40939 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
HADHAP40939 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
HADHAP40939 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
HADHAP40939 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
HADHAP40939 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC22.56■■□□□ 1.2
HADHAP40939 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC22.56■■□□□ 1.2
HADHAP40939 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
HADHAP40939 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
HADHAP40939 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC22.56■■□□□ 1.2
HADHAP40939 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
HADHAP40939 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
HADHAP40939 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
HADHAP40939 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
HADHAP40939 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
HADHAP40939 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
HADHAP40939 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC22.55■■□□□ 1.2
HADHAP40939 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
HADHAP40939 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
HADHAP40939 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
HADHAP40939 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC22.55■■□□□ 1.2
HADHAP40939 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
HADHAP40939 AL117328.2-201ENST00000624617 1940 ntBASIC22.55■■□□□ 1.2
HADHAP40939 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
HADHAP40939 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
HADHAP40939 GALC-202ENST00000393568 2054 ntTSL 2 BASIC22.54■■□□□ 1.2
HADHAP40939 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC22.54■■□□□ 1.2
HADHAP40939 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC22.54■■□□□ 1.2
HADHAP40939 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
HADHAP40939 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC22.54■■□□□ 1.2
HADHAP40939 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC22.54■■□□□ 1.2
HADHAP40939 H19-210ENST00000439725 1929 ntTSL 2 BASIC22.53■■□□□ 1.2
HADHAP40939 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
HADHAP40939 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
HADHAP40939 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC22.53■■□□□ 1.2
HADHAP40939 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
HADHAP40939 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
HADHAP40939 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
HADHAP40939 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
HADHAP40939 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
HADHAP40939 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms