Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 TSPY11P-201ENST00000442607 1045 ntBASIC21.43■■□□□ 1.02
SEMA3DO95025 OR2A1-AS1-204ENST00000470435 602 ntBASIC21.43■■□□□ 1.02
SEMA3DO95025 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SEMA3DO95025 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.43■■□□□ 1.02
SEMA3DO95025 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
SEMA3DO95025 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SEMA3DO95025 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SEMA3DO95025 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.43■■□□□ 1.02
SEMA3DO95025 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
SEMA3DO95025 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
SEMA3DO95025 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
SEMA3DO95025 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SEMA3DO95025 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
SEMA3DO95025 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC21.42■■□□□ 1.02
SEMA3DO95025 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.42■■□□□ 1.02
SEMA3DO95025 TFPT-201ENST00000391757 774 ntTSL 5 BASIC21.42■■□□□ 1.02
SEMA3DO95025 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
SEMA3DO95025 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
SEMA3DO95025 HES6-204ENST00000409182 863 ntTSL 2 BASIC21.42■■□□□ 1.02
SEMA3DO95025 CREM-229ENST00000474362 1030 ntTSL 2 BASIC21.42■■□□□ 1.02
SEMA3DO95025 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC21.42■■□□□ 1.02
SEMA3DO95025 AC079834.2-201ENST00000609776 1949 ntBASIC21.42■■□□□ 1.02
SEMA3DO95025 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC21.41■■□□□ 1.02
SEMA3DO95025 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SEMA3DO95025 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
SEMA3DO95025 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
SEMA3DO95025 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
SEMA3DO95025 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC21.41■■□□□ 1.02
SEMA3DO95025 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
SEMA3DO95025 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
SEMA3DO95025 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.41■■□□□ 1.02
SEMA3DO95025 AC068473.5-201ENST00000616428 2072 ntBASIC21.41■■□□□ 1.02
SEMA3DO95025 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
SEMA3DO95025 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SEMA3DO95025 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SEMA3DO95025 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SEMA3DO95025 LSM4-201ENST00000252816 986 ntTSL 2 BASIC21.4■■□□□ 1.02
SEMA3DO95025 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SEMA3DO95025 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC21.4■■□□□ 1.02
SEMA3DO95025 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
SEMA3DO95025 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC21.4■■□□□ 1.02
SEMA3DO95025 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SEMA3DO95025 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
SEMA3DO95025 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
SEMA3DO95025 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
SEMA3DO95025 AC144652.1-201ENST00000609974 1624 ntBASIC21.4■■□□□ 1.02
SEMA3DO95025 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SEMA3DO95025 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SEMA3DO95025 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.02
SEMA3DO95025 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SEMA3DO95025 UNC93B8-201ENST00000511903 705 ntBASIC21.39■■□□□ 1.01
SEMA3DO95025 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC21.39■■□□□ 1.01
SEMA3DO95025 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC21.39■■□□□ 1.01
SEMA3DO95025 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SEMA3DO95025 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SEMA3DO95025 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.38■■□□□ 1.01
SEMA3DO95025 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.38■■□□□ 1.01
SEMA3DO95025 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC21.38■■□□□ 1.01
SEMA3DO95025 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
SEMA3DO95025 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SEMA3DO95025 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SEMA3DO95025 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC21.38■■□□□ 1.01
SEMA3DO95025 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.38■■□□□ 1.01
SEMA3DO95025 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.37■■□□□ 1.01
SEMA3DO95025 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.37■■□□□ 1.01
SEMA3DO95025 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC21.37■■□□□ 1.01
SEMA3DO95025 TRIR-205ENST00000592273 783 ntTSL 3 BASIC21.37■■□□□ 1.01
SEMA3DO95025 MIR6724-1-201ENST00000616420 92 ntBASIC21.37■■□□□ 1.01
SEMA3DO95025 MIR6724-2-201ENST00000616483 92 ntBASIC21.37■■□□□ 1.01
SEMA3DO95025 MIR6724-4-201ENST00000617390 92 ntBASIC21.37■■□□□ 1.01
SEMA3DO95025 MIR6724-3-201ENST00000622482 92 ntBASIC21.37■■□□□ 1.01
SEMA3DO95025 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SEMA3DO95025 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SEMA3DO95025 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SEMA3DO95025 ME2-208ENST00000638937 2471 ntTSL 5 BASIC21.36■■□□□ 1.01
SEMA3DO95025 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SEMA3DO95025 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.36■■□□□ 1.01
SEMA3DO95025 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC21.36■■□□□ 1.01
SEMA3DO95025 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
SEMA3DO95025 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
SEMA3DO95025 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SEMA3DO95025 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SEMA3DO95025 GUSBP5-201ENST00000418136 578 ntBASIC21.35■■□□□ 1.01
SEMA3DO95025 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC21.35■■□□□ 1.01
SEMA3DO95025 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SEMA3DO95025 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.35■■□□□ 1.01
SEMA3DO95025 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC21.35■■□□□ 1.01
SEMA3DO95025 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SEMA3DO95025 AL353803.4-201ENST00000565882 1934 ntBASIC21.34■■□□□ 1.01
SEMA3DO95025 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
SEMA3DO95025 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SEMA3DO95025 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SEMA3DO95025 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
SEMA3DO95025 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
SEMA3DO95025 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
SEMA3DO95025 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
SEMA3DO95025 FP325331.1-202ENST00000623531 1380 ntBASIC21.34■■□□□ 1.01
SEMA3DO95025 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SEMA3DO95025 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
SEMA3DO95025 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC21.33■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 75.1 ms