Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
Ushbp1Q8R370 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
Ushbp1Q8R370 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC29.42■■■□□ 2.3
Ushbp1Q8R370 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
Ushbp1Q8R370 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC29.41■■■□□ 2.3
Ushbp1Q8R370 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC29.41■■■□□ 2.3
Ushbp1Q8R370 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
Ushbp1Q8R370 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC29.4■■■□□ 2.3
Ushbp1Q8R370 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
Ushbp1Q8R370 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
Ushbp1Q8R370 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC29.36■■■□□ 2.29
Ushbp1Q8R370 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
Ushbp1Q8R370 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC29.36■■■□□ 2.29
Ushbp1Q8R370 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC29.34■■■□□ 2.29
Ushbp1Q8R370 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC29.33■■■□□ 2.29
Ushbp1Q8R370 Mipep-204ENSMUST00000225043 1548 ntBASIC29.33■■■□□ 2.29
Ushbp1Q8R370 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
Ushbp1Q8R370 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC29.31■■■□□ 2.28
Ushbp1Q8R370 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC29.29■■■□□ 2.28
Ushbp1Q8R370 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
Ushbp1Q8R370 Gm6658-202ENSMUST00000209493 1885 ntBASIC29.25■■■□□ 2.27
Ushbp1Q8R370 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
Ushbp1Q8R370 AC166822.3-201ENSMUST00000227394 661 ntBASIC29.22■■■□□ 2.27
Ushbp1Q8R370 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
Ushbp1Q8R370 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
Ushbp1Q8R370 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC29.18■■■□□ 2.26
Ushbp1Q8R370 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC29.14■■■□□ 2.26
Ushbp1Q8R370 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC29.13■■■□□ 2.25
Ushbp1Q8R370 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC29.12■■■□□ 2.25
Ushbp1Q8R370 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
Ushbp1Q8R370 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
Ushbp1Q8R370 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC29.1■■■□□ 2.25
Ushbp1Q8R370 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC29.09■■■□□ 2.25
Ushbp1Q8R370 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC29.08■■■□□ 2.25
Ushbp1Q8R370 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
Ushbp1Q8R370 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
Ushbp1Q8R370 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
Ushbp1Q8R370 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC29.03■■■□□ 2.24
Ushbp1Q8R370 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC29.01■■■□□ 2.23
Ushbp1Q8R370 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
Ushbp1Q8R370 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC29■■■□□ 2.23
Ushbp1Q8R370 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
Ushbp1Q8R370 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC29■■■□□ 2.23
Ushbp1Q8R370 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.22
Ushbp1Q8R370 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC28.94■■■□□ 2.22
Ushbp1Q8R370 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC28.9■■■□□ 2.22
Ushbp1Q8R370 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
Ushbp1Q8R370 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
Ushbp1Q8R370 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC28.89■■■□□ 2.22
Ushbp1Q8R370 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC28.88■■■□□ 2.21
Ushbp1Q8R370 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC28.88■■■□□ 2.21
Ushbp1Q8R370 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC28.88■■■□□ 2.21
Ushbp1Q8R370 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
Ushbp1Q8R370 Gm16148-201ENSMUST00000119653 893 ntBASIC28.82■■■□□ 2.2
Ushbp1Q8R370 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC28.82■■■□□ 2.2
Ushbp1Q8R370 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
Ushbp1Q8R370 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC28.81■■■□□ 2.2
Ushbp1Q8R370 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC28.81■■■□□ 2.2
Ushbp1Q8R370 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
Ushbp1Q8R370 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
Ushbp1Q8R370 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
Ushbp1Q8R370 AC153504.1-201ENSMUST00000218379 2290 ntBASIC28.78■■■□□ 2.2
Ushbp1Q8R370 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
Ushbp1Q8R370 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
Ushbp1Q8R370 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
Ushbp1Q8R370 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC28.76■■■□□ 2.19
Ushbp1Q8R370 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
Ushbp1Q8R370 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
Ushbp1Q8R370 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC28.74■■■□□ 2.19
Ushbp1Q8R370 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
Ushbp1Q8R370 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
Ushbp1Q8R370 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC28.72■■■□□ 2.19
Ushbp1Q8R370 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC28.72■■■□□ 2.19
Ushbp1Q8R370 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC28.7■■■□□ 2.18
Ushbp1Q8R370 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC28.69■■■□□ 2.18
Ushbp1Q8R370 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
Ushbp1Q8R370 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC28.68■■■□□ 2.18
Ushbp1Q8R370 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
Ushbp1Q8R370 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC28.64■■■□□ 2.18
Ushbp1Q8R370 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
Ushbp1Q8R370 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC28.64■■■□□ 2.18
Ushbp1Q8R370 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC28.64■■■□□ 2.17
Ushbp1Q8R370 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
Ushbp1Q8R370 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC28.63■■■□□ 2.17
Ushbp1Q8R370 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
Ushbp1Q8R370 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
Ushbp1Q8R370 Tdp2-203ENSMUST00000223804 1136 ntBASIC28.62■■■□□ 2.17
Ushbp1Q8R370 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
Ushbp1Q8R370 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC28.6■■■□□ 2.17
Ushbp1Q8R370 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
Ushbp1Q8R370 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.16
Ushbp1Q8R370 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC28.56■■■□□ 2.16
Ushbp1Q8R370 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC28.56■■■□□ 2.16
Ushbp1Q8R370 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
Ushbp1Q8R370 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
Ushbp1Q8R370 Peli2-204ENSMUST00000226513 1320 ntBASIC28.53■■■□□ 2.16
Ushbp1Q8R370 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC28.53■■■□□ 2.16
Ushbp1Q8R370 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC28.52■■■□□ 2.16
Ushbp1Q8R370 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
Ushbp1Q8R370 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
Retrieved 100 of 76,532 protein–RNA pairs in 11.4 ms