Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
Ushbp1Q8R370 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
Ushbp1Q8R370 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC29.42■■■□□ 2.3
Ushbp1Q8R370 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
Ushbp1Q8R370 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC29.41■■■□□ 2.3
Ushbp1Q8R370 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC29.41■■■□□ 2.3
Ushbp1Q8R370 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
Ushbp1Q8R370 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC29.4■■■□□ 2.3
Ushbp1Q8R370 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
Ushbp1Q8R370 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
Ushbp1Q8R370 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC29.36■■■□□ 2.29
Ushbp1Q8R370 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
Ushbp1Q8R370 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC29.36■■■□□ 2.29
Ushbp1Q8R370 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC29.34■■■□□ 2.29
Ushbp1Q8R370 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC29.33■■■□□ 2.29
Ushbp1Q8R370 Mipep-204ENSMUST00000225043 1548 ntBASIC29.33■■■□□ 2.29
Ushbp1Q8R370 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
Ushbp1Q8R370 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC29.31■■■□□ 2.28
Ushbp1Q8R370 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC29.29■■■□□ 2.28
Ushbp1Q8R370 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
Ushbp1Q8R370 Gm6658-202ENSMUST00000209493 1885 ntBASIC29.25■■■□□ 2.27
Ushbp1Q8R370 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
Ushbp1Q8R370 AC166822.3-201ENSMUST00000227394 661 ntBASIC29.22■■■□□ 2.27
Ushbp1Q8R370 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
Ushbp1Q8R370 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
Ushbp1Q8R370 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC29.18■■■□□ 2.26
Ushbp1Q8R370 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC29.14■■■□□ 2.26
Ushbp1Q8R370 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC29.13■■■□□ 2.25
Ushbp1Q8R370 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC29.12■■■□□ 2.25
Ushbp1Q8R370 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
Ushbp1Q8R370 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
Ushbp1Q8R370 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC29.1■■■□□ 2.25
Ushbp1Q8R370 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC29.09■■■□□ 2.25
Ushbp1Q8R370 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC29.08■■■□□ 2.25
Ushbp1Q8R370 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
Ushbp1Q8R370 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
Ushbp1Q8R370 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
Ushbp1Q8R370 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC29.03■■■□□ 2.24
Ushbp1Q8R370 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC29.01■■■□□ 2.23
Ushbp1Q8R370 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
Ushbp1Q8R370 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC29■■■□□ 2.23
Ushbp1Q8R370 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
Ushbp1Q8R370 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC29■■■□□ 2.23
Ushbp1Q8R370 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.22
Ushbp1Q8R370 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC28.94■■■□□ 2.22
Ushbp1Q8R370 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC28.9■■■□□ 2.22
Ushbp1Q8R370 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
Ushbp1Q8R370 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
Ushbp1Q8R370 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC28.89■■■□□ 2.22
Ushbp1Q8R370 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC28.88■■■□□ 2.21
Ushbp1Q8R370 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC28.88■■■□□ 2.21
Ushbp1Q8R370 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC28.88■■■□□ 2.21
Ushbp1Q8R370 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
Ushbp1Q8R370 Gm16148-201ENSMUST00000119653 893 ntBASIC28.82■■■□□ 2.2
Ushbp1Q8R370 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC28.82■■■□□ 2.2
Ushbp1Q8R370 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
Ushbp1Q8R370 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC28.81■■■□□ 2.2
Ushbp1Q8R370 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC28.81■■■□□ 2.2
Ushbp1Q8R370 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
Ushbp1Q8R370 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
Ushbp1Q8R370 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
Ushbp1Q8R370 AC153504.1-201ENSMUST00000218379 2290 ntBASIC28.78■■■□□ 2.2
Ushbp1Q8R370 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
Ushbp1Q8R370 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
Ushbp1Q8R370 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
Ushbp1Q8R370 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC28.76■■■□□ 2.19
Ushbp1Q8R370 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
Ushbp1Q8R370 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
Ushbp1Q8R370 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC28.74■■■□□ 2.19
Ushbp1Q8R370 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
Ushbp1Q8R370 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
Ushbp1Q8R370 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC28.72■■■□□ 2.19
Ushbp1Q8R370 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC28.72■■■□□ 2.19
Ushbp1Q8R370 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC28.7■■■□□ 2.18
Ushbp1Q8R370 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC28.69■■■□□ 2.18
Ushbp1Q8R370 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
Ushbp1Q8R370 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC28.68■■■□□ 2.18
Ushbp1Q8R370 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
Ushbp1Q8R370 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC28.64■■■□□ 2.18
Ushbp1Q8R370 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
Ushbp1Q8R370 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC28.64■■■□□ 2.18
Ushbp1Q8R370 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC28.64■■■□□ 2.17
Ushbp1Q8R370 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
Ushbp1Q8R370 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC28.63■■■□□ 2.17
Ushbp1Q8R370 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
Ushbp1Q8R370 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
Ushbp1Q8R370 Tdp2-203ENSMUST00000223804 1136 ntBASIC28.62■■■□□ 2.17
Ushbp1Q8R370 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
Ushbp1Q8R370 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC28.6■■■□□ 2.17
Ushbp1Q8R370 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
Ushbp1Q8R370 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.16
Ushbp1Q8R370 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC28.56■■■□□ 2.16
Ushbp1Q8R370 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC28.56■■■□□ 2.16
Ushbp1Q8R370 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
Ushbp1Q8R370 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
Ushbp1Q8R370 Peli2-204ENSMUST00000226513 1320 ntBASIC28.53■■■□□ 2.16
Ushbp1Q8R370 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC28.53■■■□□ 2.16
Ushbp1Q8R370 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC28.52■■■□□ 2.16
Ushbp1Q8R370 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
Ushbp1Q8R370 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
Retrieved 100 of 76,532 protein–RNA pairs in 19.6 ms